Literature DB >> 23900287

Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor.

Yu Fu1, Akira Kawabe, Mathilde Etcheverry, Tasuku Ito, Atsushi Toyoda, Asao Fujiyama, Vincent Colot, Yoshiaki Tarutani, Tetsuji Kakutani.   

Abstract

Transposable elements (TEs) have a major impact on genome evolution, but they are potentially deleterious, and most of them are silenced by epigenetic mechanisms, such as DNA methylation. Here, we report the characterization of a TE encoding an activity to counteract epigenetic silencing by the host. In Arabidopsis thaliana, we identified a mobile copy of the Mutator-like element (MULE) with degenerated terminal inverted repeats (TIRs). This TE, named Hiun (Hi), is silent in wild-type plants, but it transposes when DNA methylation is abolished. When a Hi transgene was introduced into the wild-type background, it induced excision of the endogenous Hi copy, suggesting that Hi is the autonomously mobile copy. In addition, the transgene induced loss of DNA methylation and transcriptional activation of the endogenous Hi. Most importantly, the trans-activation of Hi depends on a Hi-encoded protein different from the conserved transposase. Proteins related to this anti-silencing factor, which we named VANC, are widespread in the non-TIR MULEs and may have contributed to the recent success of these TEs in natural Arabidopsis populations.

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Year:  2013        PMID: 23900287      PMCID: PMC3773815          DOI: 10.1038/emboj.2013.169

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  48 in total

Review 1.  A unified classification system for eukaryotic transposable elements.

Authors:  Thomas Wicker; François Sabot; Aurélie Hua-Van; Jeffrey L Bennetzen; Pierre Capy; Boulos Chalhoub; Andrew Flavell; Philippe Leroy; Michele Morgante; Olivier Panaud; Etienne Paux; Phillip SanMiguel; Alan H Schulman
Journal:  Nat Rev Genet       Date:  2007-12       Impact factor: 53.242

2.  Reactivation of a silent Ac following tissue culture is associated with heritable alterations in its methylation pattern.

Authors:  R I Brettell; E S Dennis
Journal:  Mol Gen Genet       Date:  1991-10

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  Coordinate suppression of mutations caused by Robertson's mutator transposons in maize.

Authors:  R Martienssen; A Baron
Journal:  Genetics       Date:  1994-03       Impact factor: 4.562

5.  DNA modification of a maize transposable element correlates with loss of activity.

Authors:  V L Chandler; V Walbot
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

6.  Characterization of a highly conserved sequence related to mutator transposable elements in maize.

Authors:  L E Talbert; V L Chandler
Journal:  Mol Biol Evol       Date:  1988-09       Impact factor: 16.240

7.  Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis.

Authors:  A Miura; S Yonebayashi; K Watanabe; T Toyama; H Shimada; T Kakutani
Journal:  Nature       Date:  2001-05-10       Impact factor: 49.962

8.  Transposon diversity in Arabidopsis thaliana.

Authors:  Q H Le; S Wright; Z Yu; T Bureau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

9.  Pack-MULE transposable elements mediate gene evolution in plants.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Sean R Eddy; Susan R Wessler
Journal:  Nature       Date:  2004-09-30       Impact factor: 49.962

10.  Bursts of retrotransposition reproduced in Arabidopsis.

Authors:  Sayuri Tsukahara; Akie Kobayashi; Akira Kawabe; Olivier Mathieu; Asuka Miura; Tetsuji Kakutani
Journal:  Nature       Date:  2009-09-06       Impact factor: 49.962

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  29 in total

1.  FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.

Authors:  Shojiro Tamaki; Hiroyuki Tsuji; Ayana Matsumoto; Akiko Fujita; Zenpei Shimatani; Rie Terada; Tomoaki Sakamoto; Tetsuya Kurata; Ko Shimamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

Review 2.  Control of transposable elements in Arabidopsis thaliana.

Authors:  Hidetaka Ito; Tetsuji Kakutani
Journal:  Chromosome Res       Date:  2014-06       Impact factor: 5.239

Review 3.  Diversity and evolution of transposable elements in Arabidopsis.

Authors:  Zoé Joly-Lopez; Thomas E Bureau
Journal:  Chromosome Res       Date:  2014-06       Impact factor: 5.239

Review 4.  Genetic and epigenetic variation of transposable elements in Arabidopsis.

Authors:  Charles J Underwood; Ian R Henderson; Robert A Martienssen
Journal:  Curr Opin Plant Biol       Date:  2017-03-23       Impact factor: 7.834

5.  Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids.

Authors:  Mélanie Rigal; Claude Becker; Thierry Pélissier; Romain Pogorelcnik; Jane Devos; Yoko Ikeda; Detlef Weigel; Olivier Mathieu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-21       Impact factor: 11.205

Review 6.  Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.

Authors:  Nathan M Springer; Damon Lisch; Qing Li
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

Review 7.  Impact of transposable elements on polyploid plant genomes.

Authors:  Carlos M Vicient; Josep M Casacuberta
Journal:  Ann Bot       Date:  2017-08-01       Impact factor: 4.357

8.  Gene-body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis.

Authors:  Soichi Inagaki; Mayumi Takahashi; Aoi Hosaka; Tasuku Ito; Atsushi Toyoda; Asao Fujiyama; Yoshiaki Tarutani; Tetsuji Kakutani
Journal:  EMBO J       Date:  2017-01-18       Impact factor: 11.598

9.  Fast co-evolution of anti-silencing systems shapes the invasiveness of Mu-like DNA transposons in eudicots.

Authors:  Taku Sasaki; Kyudo Ro; Erwann Caillieux; Riku Manabe; Grégoire Bohl-Viallefond; Pierre Baduel; Vincent Colot; Tetsuji Kakutani; Leandro Quadrana
Journal:  EMBO J       Date:  2022-03-14       Impact factor: 14.012

10.  Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis.

Authors:  Tasuku Ito; Yoshiaki Tarutani; Taiko Kim To; Mohamed Kassam; Evelyne Duvernois-Berthet; Sandra Cortijo; Kazuya Takashima; Hidetoshi Saze; Atsushi Toyoda; Asao Fujiyama; Vincent Colot; Tetsuji Kakutani
Journal:  PLoS Genet       Date:  2015-04-22       Impact factor: 5.917

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