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Literature DB >> 24801341

Control of transposable elements in Arabidopsis thaliana.

Abstract

Arabidopsis thaliana serves as a very good model organism to investigate the control of transposable elements (TEs) by genetic and genomic approaches. As TE movements are potentially deleterious to the hosts, hosts silence TEs by epigenetic mechanisms, such as DNA methylation. DNA methylation is controlled by DNA methyltransferases and other regulators, including histone modifiers and chromatin remodelers. RNAi machinery directs DNA methylation to euchromatic TEs, which is under developmental control. In addition to the epigenetic controls, some TEs are controlled by environmental factors. TEs often affect expression of nearby genes, providing evolutionary sources for epigenetic, developmental, and environmental gene controls, which could even be beneficial for the host.

Entities: Species

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Year: 2014 PMID： 24801341 DOI： 10.1007/s10577-014-9417-9

Source DB: PubMed Journal: Chromosome Res ISSN： 0967-3849 Impact factor: 5.239

73 in total

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Authors: W J Soppe; S E Jacobsen; C Alonso-Blanco; J P Jackson; T Kakutani; M Koornneef; A J Peeters
Journal: Mol Cell Date: 2000-10 Impact factor: 17.970

2. Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte.

Authors: Vera K Schoft; Nina Chumak; Yeonhee Choi; Mike Hannon; Marcelina Garcia-Aguilar; Adriana Machlicova; Lucyna Slusarz; Magdalena Mosiolek; Jin-Sup Park; Guen Tae Park; Robert L Fischer; Hisashi Tamaru
Journal: Proc Natl Acad Sci U S A Date: 2011-04-25 Impact factor: 11.205

3. The significance of responses of the genome to challenge.

Authors: B McClintock
Journal: Science Date: 1984-11-16 Impact factor: 47.728

4. Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin.

Authors: Vera K Schoft; Nina Chumak; Magdalena Mosiolek; Lucyna Slusarz; Vukoslav Komnenovic; Lynette Brownfield; David Twell; Tetsuji Kakutani; Hisashi Tamaru
Journal: EMBO Rep Date: 2009-08-14 Impact factor: 8.807

5. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors: Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal: Nature Date: 2011-03-13 Impact factor: 49.962

6. Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate.

Authors: S Takeda; K Sugimoto; H Otsuki; H Hirochika
Journal: Plant Mol Biol Date: 1998-02 Impact factor: 4.076

7. Transgenerational epigenetic instability is a source of novel methylation variants.

Authors: Robert J Schmitz; Matthew D Schultz; Mathew G Lewsey; Ronan C O'Malley; Mark A Urich; Ondrej Libiger; Nicholas J Schork; Joseph R Ecker
Journal: Science Date: 2011-09-15 Impact factor: 47.728

8. Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants.

Authors: Eigo Fukai; Yosuke Umehara; Shusei Sato; Makoto Endo; Hiroshi Kouchi; Makoto Hayashi; Jens Stougaard; Hirohiko Hirochika
Journal: PLoS Genet Date: 2010-03-05 Impact factor: 5.917

9. Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Authors: J A Jeddeloh; T L Stokes; E J Richards
Journal: Nat Genet Date: 1999-05 Impact factor: 38.330

10. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.

Authors: Andrea D McCue; Saivageethi Nuthikattu; Sarah H Reeder; R Keith Slotkin
Journal: PLoS Genet Date: 2012-02-09 Impact factor: 5.917

19 in total

1. RNA interference-independent reprogramming of DNA methylation in Arabidopsis.

Authors: Taiko Kim To; Yuichiro Nishizawa; Soichi Inagaki; Yoshiaki Tarutani; Sayaka Tominaga; Atsushi Toyoda; Asao Fujiyama; Frédéric Berger; Tetsuji Kakutani
Journal: Nat Plants Date: 2020-11-30 Impact factor: 15.793

2. Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Authors: Romain Guyot; Thibaud Darré; Mathilde Dupeyron; Alexandre de Kochko; Serge Hamon; Emmanuel Couturon; Dominique Crouzillat; Michel Rigoreau; Jean-Jacques Rakotomalala; Nathalie E Raharimalala; Sélastique Doffou Akaffou; Perla Hamon
Journal: Mol Genet Genomics Date: 2016-07-28 Impact factor: 3.291

Review 3. Impact of transposable elements on polyploid plant genomes.

Authors: Carlos M Vicient; Josep M Casacuberta
Journal: Ann Bot Date: 2017-08-01 Impact factor: 4.357

4. Transcription of soybean retrotransposon SORE-1 is temporally upregulated in developing ovules.

Authors: Kenta Nakashima; Mayumi Tsuchiya; Sae Fukushima; Jun Abe; Akira Kanazawa
Journal: Planta Date: 2018-09-12 Impact factor: 4.116

5. Analysis of somaclonal variation in transgenic and regenerated plants of Arabidopsis thaliana using methylation related metAFLP and TMD markers.

Authors: Carlos J Coronel; Ana I González; María L Ruiz; Carlos Polanco
Journal: Plant Cell Rep Date: 2017-10-16 Impact factor: 4.570

6. Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome.

Authors: Frédéric Pontvianne; Marie-Christine Carpentier; Nathalie Durut; Veronika Pavlištová; Karin Jaške; Šárka Schořová; Hugues Parrinello; Marine Rohmer; Craig S Pikaard; Miloslava Fojtová; Jiří Fajkus; Julio Sáez-Vásquez
Journal: Cell Rep Date: 2016-07-28 Impact factor: 9.423