Literature DB >> 23900247

mentha: a resource for browsing integrated protein-interaction networks.

Alberto Calderone, Luisa Castagnoli, Gianni Cesareni.   

Abstract

Mesh:

Year:  2013        PMID: 23900247     DOI: 10.1038/nmeth.2561

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  6 in total

1.  Recurated protein interaction datasets.

Authors:  Lukasz Salwinski; Luana Licata; Andrew Winter; David Thorneycroft; Jyoti Khadake; Arnaud Ceol; Andrew Chatr Aryamontri; Rose Oughtred; Michael Livstone; Lorrie Boucher; David Botstein; Kara Dolinski; Tanya Berardini; Eva Huala; Mike Tyers; David Eisenberg; Gianni Cesareni; Henning Hermjakob
Journal:  Nat Methods       Date:  2009-12       Impact factor: 28.547

2.  HuPho: the human phosphatase portal.

Authors:  Susanna Liberti; Francesca Sacco; Alberto Calderone; Livia Perfetto; Marta Iannuccelli; Simona Panni; Elena Santonico; Anita Palma; Aurelio P Nardozza; Luisa Castagnoli; Gianni Cesareni
Journal:  FEBS J       Date:  2012-08-24       Impact factor: 5.542

3.  PSICQUIC and PSISCORE: accessing and scoring molecular interactions.

Authors:  Bruno Aranda; Hagen Blankenburg; Samuel Kerrien; Fiona S L Brinkman; Arnaud Ceol; Emilie Chautard; Jose M Dana; Javier De Las Rivas; Marine Dumousseau; Eugenia Galeota; Anna Gaulton; Johannes Goll; Robert E W Hancock; Ruth Isserlin; Rafael C Jimenez; Jules Kerssemakers; Jyoti Khadake; David J Lynn; Magali Michaut; Gavin O'Kelly; Keiichiro Ono; Sandra Orchard; Carlos Prieto; Sabry Razick; Olga Rigina; Lukasz Salwinski; Milan Simonovic; Sameer Velankar; Andrew Winter; Guanming Wu; Gary D Bader; Gianni Cesareni; Ian M Donaldson; David Eisenberg; Gerard J Kleywegt; John Overington; Sylvie Ricard-Blum; Mike Tyers; Mario Albrecht; Henning Hermjakob
Journal:  Nat Methods       Date:  2011-06-29       Impact factor: 28.547

4.  Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.

Authors:  Sandra Orchard; Samuel Kerrien; Sara Abbani; Bruno Aranda; Jignesh Bhate; Shelby Bidwell; Alan Bridge; Leonardo Briganti; Fiona S L Brinkman; Fiona Brinkman; Gianni Cesareni; Andrew Chatr-aryamontri; Emilie Chautard; Carol Chen; Marine Dumousseau; Johannes Goll; Robert E W Hancock; Robert Hancock; Linda I Hannick; Igor Jurisica; Jyoti Khadake; David J Lynn; Usha Mahadevan; Livia Perfetto; Arathi Raghunath; Sylvie Ricard-Blum; Bernd Roechert; Lukasz Salwinski; Volker Stümpflen; Mike Tyers; Peter Uetz; Ioannis Xenarios; Henning Hermjakob
Journal:  Nat Methods       Date:  2012-04       Impact factor: 28.547

5.  The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

Authors:  Henning Hermjakob; Luisa Montecchi-Palazzi; Gary Bader; Jérôme Wojcik; Lukasz Salwinski; Arnaud Ceol; Susan Moore; Sandra Orchard; Ugis Sarkans; Christian von Mering; Bernd Roechert; Sylvain Poux; Eva Jung; Henning Mersch; Paul Kersey; Michael Lappe; Yixue Li; Rong Zeng; Debashis Rana; Macha Nikolski; Holger Husi; Christine Brun; K Shanker; Seth G N Grant; Chris Sander; Peer Bork; Weimin Zhu; Akhilesh Pandey; Alvis Brazma; Bernard Jacq; Marc Vidal; David Sherman; Pierre Legrain; Gianni Cesareni; Ioannis Xenarios; David Eisenberg; Boris Steipe; Chris Hogue; Rolf Apweiler
Journal:  Nat Biotechnol       Date:  2004-02       Impact factor: 54.908

6.  MINT, the molecular interaction database: 2012 update.

Authors:  Luana Licata; Leonardo Briganti; Daniele Peluso; Livia Perfetto; Marta Iannuccelli; Eugenia Galeota; Francesca Sacco; Anita Palma; Aurelio Pio Nardozza; Elena Santonico; Luisa Castagnoli; Gianni Cesareni
Journal:  Nucleic Acids Res       Date:  2011-11-16       Impact factor: 16.971

  6 in total
  122 in total

1.  A Multireporter Bacterial 2-Hybrid Assay for the High-Throughput and Dynamic Assay of PDZ Domain-Peptide Interactions.

Authors:  David M Ichikawa; Carles Corbi-Verge; Michael J Shen; Jamie Snider; Victoria Wong; Igor Stagljar; Philip M Kim; Marcus B Noyes
Journal:  ACS Synth Biol       Date:  2019-04-18       Impact factor: 5.110

2.  A scored human protein-protein interaction network to catalyze genomic interpretation.

Authors:  Taibo Li; Rasmus Wernersson; Rasmus B Hansen; Heiko Horn; Johnathan Mercer; Greg Slodkowicz; Christopher T Workman; Olga Rigina; Kristoffer Rapacki; Hans H Stærfeldt; Søren Brunak; Thomas S Jensen; Kasper Lage
Journal:  Nat Methods       Date:  2016-11-28       Impact factor: 28.547

3.  Predicted Drosophila Interactome Resource and web tool for functional interpretation of differentially expressed genes.

Authors:  Xiao-Bao Ding; Jie Jin; Yu-Tian Tao; Wen-Ping Guo; Li Ruan; Qiao-Lei Yang; Peng-Cheng Chen; Heng Yao; Hai-Bo Zhang; Xin Chen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

4.  DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae.

Authors:  Ying Zhang; Yubin Xie; Wenzhong Liu; Wankun Deng; Di Peng; Chenwei Wang; Haodong Xu; Chen Ruan; Yongjie Deng; Yaping Guo; Chenjun Lu; Cong Yi; Jian Ren; Yu Xue
Journal:  Autophagy       Date:  2019-06-20       Impact factor: 16.016

Review 5.  Mapping the protein-protein and genetic interactions of cancer to guide precision medicine.

Authors:  Mehdi Bouhaddou; Manon Eckhardt; Zun Zar Chi Naing; Minkyu Kim; Trey Ideker; Nevan J Krogan
Journal:  Curr Opin Genet Dev       Date:  2019-07-06       Impact factor: 5.578

6.  Predicted rat interactome database and gene set linkage analysis.

Authors:  Yu-Tian Tao; Xiao-Bao Ding; Jie Jin; Hai-Bo Zhang; Wen-Ping Guo; Li Ruan; Qiao-Lei Yang; Peng-Cheng Chen; Heng Yao; Xin Chen
Journal:  Database (Oxford)       Date:  2020-11-20       Impact factor: 3.451

Review 7.  Precision medicine - networks to the rescue.

Authors:  Anupama Yadav; Marc Vidal; Katja Luck
Journal:  Curr Opin Biotechnol       Date:  2020-03-18       Impact factor: 9.740

Review 8.  Protein-protein interactions and genetic diseases: The interactome.

Authors:  Kasper Lage
Journal:  Biochim Biophys Acta       Date:  2014-06-02

9.  Systematic Evaluation of Molecular Networks for Discovery of Disease Genes.

Authors:  Justin K Huang; Daniel E Carlin; Michael Ku Yu; Wei Zhang; Jason F Kreisberg; Pablo Tamayo; Trey Ideker
Journal:  Cell Syst       Date:  2018-03-28       Impact factor: 10.304

10.  Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.

Authors:  Jing Li; Wangshu Zhang; Hui Yang; Daniel P Howrigan; Brent Wilkinson; Tade Souaiaia; Oleg V Evgrafov; Giulio Genovese; Veronica A Clementel; Jennifer C Tudor; Ted Abel; James A Knowles; Benjamin M Neale; Kai Wang; Fengzhu Sun; Marcelo P Coba
Journal:  Nat Neurosci       Date:  2017-06-26       Impact factor: 24.884

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