Literature DB >> 22804825

HuPho: the human phosphatase portal.

Susanna Liberti1, Francesca Sacco, Alberto Calderone, Livia Perfetto, Marta Iannuccelli, Simona Panni, Elena Santonico, Anita Palma, Aurelio P Nardozza, Luisa Castagnoli, Gianni Cesareni.   

Abstract

Phosphatases and kinases contribute to the regulation of protein phosphorylation homeostasis in the cell. Phosphorylation is a key post-translational modification underlying the regulation of many cellular processes. Thus, a comprehensive picture of phosphatase function and the identification of their target substrates would aid a systematic approach to a mechanistic description of cell signalling. Here we present a website designed to facilitate the retrieval of information about human protein phosphatases. To this end we developed a search engine to recover and integrate information annotated in several publicly available web resources. In addition we present a text-mining-assisted annotation effort aimed at extracting phosphatase related data reported in the scientific literature. The HuPho (human phosphatases) website can be accessed at http://hupho.uniroma2.it.
© 2012 The Authors Journal compilation © 2012 FEBS.

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Year:  2012        PMID: 22804825     DOI: 10.1111/j.1742-4658.2012.08712.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  22 in total

1.  mentha: a resource for browsing integrated protein-interaction networks.

Authors:  Alberto Calderone; Luisa Castagnoli; Gianni Cesareni
Journal:  Nat Methods       Date:  2013-08       Impact factor: 28.547

2.  Mapping the human phosphatome on growth pathways.

Authors:  Francesca Sacco; Pier Federico Gherardini; Serena Paoluzi; Julio Saez-Rodriguez; Manuela Helmer-Citterich; Antonella Ragnini-Wilson; Luisa Castagnoli; Gianni Cesareni
Journal:  Mol Syst Biol       Date:  2012       Impact factor: 11.429

3.  Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways.

Authors:  Francesca Sacco; Karsten Boldt; Alberto Calderone; Simona Panni; Serena Paoluzi; Luisa Castagnoli; Marius Ueffing; Gianni Cesareni
Journal:  Front Genet       Date:  2014-05-07       Impact factor: 4.599

Review 4.  Integrating phosphoproteomics in systems biology.

Authors:  Yu Liu; Mark R Chance
Journal:  Comput Struct Biotechnol J       Date:  2014-08-01       Impact factor: 7.271

5.  The human DEPhOsphorylation database DEPOD: a 2015 update.

Authors:  Guangyou Duan; Xun Li; Maja Köhn
Journal:  Nucleic Acids Res       Date:  2014-10-20       Impact factor: 16.971

6.  Genome wide in silico analysis of Plasmodium falciparum phosphatome.

Authors:  Rajan Pandey; Asif Mohmmed; Christine Pierrot; Jamal Khalife; Pawan Malhotra; Dinesh Gupta
Journal:  BMC Genomics       Date:  2014-11-25       Impact factor: 3.969

7.  SIGNOR: a database of causal relationships between biological entities.

Authors:  Livia Perfetto; Leonardo Briganti; Alberto Calderone; Andrea Cerquone Perpetuini; Marta Iannuccelli; Francesca Langone; Luana Licata; Milica Marinkovic; Anna Mattioni; Theodora Pavlidou; Daniele Peluso; Lucia Lisa Petrilli; Stefano Pirrò; Daniela Posca; Elena Santonico; Alessandra Silvestri; Filomena Spada; Luisa Castagnoli; Gianni Cesareni
Journal:  Nucleic Acids Res       Date:  2015-10-13       Impact factor: 16.971

8.  Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases.

Authors:  Anita Palma; Michele Tinti; Serena Paoluzi; Elena Santonico; Bernd Willem Brandt; Rob Hooft van Huijsduijnen; Antonia Masch; Jaap Heringa; Mike Schutkowski; Luisa Castagnoli; Gianni Cesareni
Journal:  J Biol Chem       Date:  2017-02-03       Impact factor: 5.157

9.  Analysis of the Protein phosphotome of Entamoeba histolytica reveals an intricate phosphorylation network.

Authors:  Tamanna Anwar; Samudrala Gourinath
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

10.  The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species.

Authors:  Matthew M Hindle; Sarah F Martin; Zeenat B Noordally; Gerben van Ooijen; Martin E Barrios-Llerena; T Ian Simpson; Thierry Le Bihan; Andrew J Millar
Journal:  BMC Genomics       Date:  2014-08-02       Impact factor: 3.969

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