Literature DB >> 19935838

Recurated protein interaction datasets.

Lukasz Salwinski, Luana Licata, Andrew Winter, David Thorneycroft, Jyoti Khadake, Arnaud Ceol, Andrew Chatr Aryamontri, Rose Oughtred, Michael Livstone, Lorrie Boucher, David Botstein, Kara Dolinski, Tanya Berardini, Eva Huala, Mike Tyers, David Eisenberg, Gianni Cesareni, Henning Hermjakob.   

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Year:  2009        PMID: 19935838     DOI: 10.1038/nmeth1209-860

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  8 in total

1.  The Database of Interacting Proteins: 2004 update.

Authors:  Lukasz Salwinski; Christopher S Miller; Adam J Smith; Frank K Pettit; James U Bowie; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition.

Authors:  Sandra Orchard; Samuel Kerrien; Philip Jones; Arnaud Ceol; Andrew Chatr-Aryamontri; Lukasz Salwinski; Jason Nerothin; Henning Hermjakob
Journal:  Proteomics       Date:  2007-09       Impact factor: 3.984

3.  IntAct--open source resource for molecular interaction data.

Authors:  S Kerrien; Y Alam-Faruque; B Aranda; I Bancarz; A Bridge; C Derow; E Dimmer; M Feuermann; A Friedrichsen; R Huntley; C Kohler; J Khadake; C Leroy; A Liban; C Lieftink; L Montecchi-Palazzi; S Orchard; J Risse; K Robbe; B Roechert; D Thorneycroft; Y Zhang; R Apweiler; H Hermjakob
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

4.  MINT: the Molecular INTeraction database.

Authors:  Andrew Chatr-aryamontri; Arnaud Ceol; Luisa Montecchi Palazzi; Giuliano Nardelli; Maria Victoria Schneider; Luisa Castagnoli; Gianni Cesareni
Journal:  Nucleic Acids Res       Date:  2006-11-29       Impact factor: 16.971

5.  Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Authors:  Teresa Reguly; Ashton Breitkreutz; Lorrie Boucher; Bobby-Joe Breitkreutz; Nizar N Batada; Gary C Hon; Chad L Myers; Ainslie Parsons; Helena Friesen; Rose Oughtred; Amy Tong; Chris Stark; Yuen Ho; David Botstein; Brenda Andrews; Charles Boone; Olga G Troyanskya; Trey Ideker; Kara Dolinski; Mike Tyers
Journal:  J Biol       Date:  2006-06-08

6.  Literature-curated protein interaction datasets.

Authors:  Michael E Cusick; Haiyuan Yu; Alex Smolyar; Kavitha Venkatesan; Anne-Ruxandra Carvunis; Nicolas Simonis; Jean-François Rual; Heather Borick; Pascal Braun; Matija Dreze; Jean Vandenhaute; Mary Galli; Junshi Yazaki; David E Hill; Joseph R Ecker; Frederick P Roth; Marc Vidal
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

7.  The BioGRID Interaction Database: 2008 update.

Authors:  Bobby-Joe Breitkreutz; Chris Stark; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Michael Livstone; Rose Oughtred; Daniel H Lackner; Jürg Bähler; Valerie Wood; Kara Dolinski; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2007-11-13       Impact factor: 16.971

8.  The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

Authors:  David Swarbreck; Christopher Wilks; Philippe Lamesch; Tanya Z Berardini; Margarita Garcia-Hernandez; Hartmut Foerster; Donghui Li; Tom Meyer; Robert Muller; Larry Ploetz; Amie Radenbaugh; Shanker Singh; Vanessa Swing; Christophe Tissier; Peifen Zhang; Eva Huala
Journal:  Nucleic Acids Res       Date:  2007-11-05       Impact factor: 16.971

  8 in total
  29 in total

1.  An interaction map of endoplasmic reticulum chaperones and foldases.

Authors:  Gregor Jansen; Pekka Määttänen; Alexey Y Denisov; Leslie Scarffe; Babette Schade; Haouaria Balghi; Kurt Dejgaard; Leanna Y Chen; William J Muller; Kalle Gehring; David Y Thomas
Journal:  Mol Cell Proteomics       Date:  2012-06-04       Impact factor: 5.911

2.  Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets.

Authors:  KiYoung Lee; David Thorneycroft; Premanand Achuthan; Henning Hermjakob; Trey Ideker
Journal:  Plant Cell       Date:  2010-04-06       Impact factor: 11.277

3.  mentha: a resource for browsing integrated protein-interaction networks.

Authors:  Alberto Calderone; Luisa Castagnoli; Gianni Cesareni
Journal:  Nat Methods       Date:  2013-08       Impact factor: 28.547

Review 4.  Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.

Authors:  Irina M Armean; Kathryn S Lilley; Matthew W B Trotter
Journal:  Mol Cell Proteomics       Date:  2012-10-15       Impact factor: 5.911

5.  A scored human protein-protein interaction network to catalyze genomic interpretation.

Authors:  Taibo Li; Rasmus Wernersson; Rasmus B Hansen; Heiko Horn; Johnathan Mercer; Greg Slodkowicz; Christopher T Workman; Olga Rigina; Kristoffer Rapacki; Hans H Stærfeldt; Søren Brunak; Thomas S Jensen; Kasper Lage
Journal:  Nat Methods       Date:  2016-11-28       Impact factor: 28.547

6.  In silico epigenetics of metal exposure and subclinical atherosclerosis in middle aged men: pilot results from the Aragon Workers Health Study.

Authors:  Angela L Riffo-Campos; Azahara Fuentes-Trillo; Wan Y Tang; Zoraida Soriano; Griselda De Marco; Pilar Rentero-Garrido; Victoria Adam-Felici; Veronica Lendinez-Tortajada; Kevin Francesconi; Walter Goessler; Christine Ladd-Acosta; Montse Leon-Latre; Jose A Casasnovas; F Javier Chaves; Ana Navas-Acien; Eliseo Guallar; Maria Tellez-Plaza
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

7.  Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.

Authors:  Sandra Orchard; Samuel Kerrien; Sara Abbani; Bruno Aranda; Jignesh Bhate; Shelby Bidwell; Alan Bridge; Leonardo Briganti; Fiona S L Brinkman; Fiona Brinkman; Gianni Cesareni; Andrew Chatr-aryamontri; Emilie Chautard; Carol Chen; Marine Dumousseau; Johannes Goll; Robert E W Hancock; Robert Hancock; Linda I Hannick; Igor Jurisica; Jyoti Khadake; David J Lynn; Usha Mahadevan; Livia Perfetto; Arathi Raghunath; Sylvie Ricard-Blum; Bernd Roechert; Lukasz Salwinski; Volker Stümpflen; Mike Tyers; Peter Uetz; Ioannis Xenarios; Henning Hermjakob
Journal:  Nat Methods       Date:  2012-04       Impact factor: 28.547

8.  Protein-protein interactions essentials: key concepts to building and analyzing interactome networks.

Authors:  Javier De Las Rivas; Celia Fontanillo
Journal:  PLoS Comput Biol       Date:  2010-06-24       Impact factor: 4.475

9.  Curating the innate immunity interactome.

Authors:  David J Lynn; Calvin Chan; Misbah Naseer; Melissa Yau; Raymond Lo; Anastasia Sribnaia; Giselle Ring; Jaimmie Que; Kathleen Wee; Geoffrey L Winsor; Matthew R Laird; Karin Breuer; Amir K Foroushani; Fiona S L Brinkman; Robert E W Hancock
Journal:  BMC Syst Biol       Date:  2010-08-20

10.  iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.

Authors:  Brian Turner; Sabry Razick; Andrei L Turinsky; James Vlasblom; Edgard K Crowdy; Emerson Cho; Kyle Morrison; Ian M Donaldson; Shoshana J Wodak
Journal:  Database (Oxford)       Date:  2010-10-12       Impact factor: 3.451

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