Literature DB >> 23898784

Structure of a sugar N-formyltransferase from Campylobacter jejuni.

James B Thoden1, Marie-France Goneau, Michel Gilbert, Hazel M Holden.   

Abstract

The O-antigens, which are components of the outer membranes of Gram-negative bacteria, are responsible for the wide species variations seen in nature and are thought to play a role in bacterial virulence. They often contain unusual dideoxysugars such as 3,6-dideoxy-3-formamido-d-glucose (Qui3NFo). Here, we describe a structural and functional investigation of the protein C8J_1081 from Campylobacter jejuni 81116, which is involved in the biosynthesis of Qui3NFo. Specifically, the enzyme, hereafter referred to as WlaRD, catalyzes the N-formylation of dTDP-3,6-dideoxy-3-amino-d-glucose (dTDP-Qui3N) using N(10)-formyltetrahydrofolate as the carbon source. For this investigation, seven X-ray structures of WlaRD, in complexes with various dTDP-linked sugars and cofactors, were determined to resolutions of 1.9 Å or better. One of the models, with bound N(10)-formyltetrahydrofolate and dTDP, represents the first glimpse of an N-formyltransferase with its natural cofactor. Another model contains the reaction products, tetrahydrofolate and dTDP-Qui3NFo. In combination, the structures provide snapshots of the WlaRD active site before and after catalysis. On the basis of these structures, three amino acid residues were targeted for study: Asn 94, His 96, and Asp 132. Mutations of any of these residues resulted in a complete loss of enzymatic activity. Given the position of His 96 in the active site, it can be postulated that it functions as the active site base to remove a proton from the sugar amino group as it attacks the carbonyl carbon of the N-10 formyl group of the cofactor. Enzyme assays demonstrate that WlaRD is also capable of utilizing dTDP-3,6-dideoxy-3-amino-d-galactose (dTDP-Fuc3N) as a substrate, albeit at a much reduced catalytic efficiency.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23898784      PMCID: PMC3915720          DOI: 10.1021/bi4009006

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  Oxidative decarboxylation of UDP-glucuronic acid in extracts of polymyxin-resistant Escherichia coli. Origin of lipid a species modified with 4-amino-4-deoxy-L-arabinose.

Authors:  Steven D Breazeale; Anthony A Ribeiro; Christian R H Raetz
Journal:  J Biol Chem       Date:  2001-11-08       Impact factor: 5.157

2.  Genetic analysis of the O-antigen of Providencia alcalifaciens O30 and biochemical characterization of a formyltransferase involved in the synthesis of a Qui4N derivative.

Authors:  Bin Liu; Miao Chen; Andrei V Perepelov; Jianfeng Liu; Olga G Ovchinnikova; Dawei Zhou; Lu Feng; Antoni Rozalski; Yuriy A Knirel; Lei Wang
Journal:  Glycobiology       Date:  2012-05-31       Impact factor: 4.313

3.  Structure and function of both domains of ArnA, a dual function decarboxylase and a formyltransferase, involved in 4-amino-4-deoxy-L-arabinose biosynthesis.

Authors:  Gareth J Williams; Steven D Breazeale; Christian R H Raetz; James H Naismith
Journal:  J Biol Chem       Date:  2005-04-04       Impact factor: 5.157

4.  Structures of apo and complexed Escherichia coli glycinamide ribonucleotide transformylase.

Authors:  R J Almassy; C A Janson; C C Kan; Z Hostomska
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

Review 5.  Molecular mimicry of host structures by bacterial lipopolysaccharides and its contribution to disease.

Authors:  A P Moran; M M Prendergast; B J Appelmelk
Journal:  FEMS Immunol Med Microbiol       Date:  1996-12-01

6.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

7.  Somatic antigens of Pseudomonas aeruginosa. The structure of the O-specific polysaccharide chains of lipopolysaccharides of P. aeruginosa serogroup O4 (Lányi) and related serotype O6 (Habs) and immunotype 1 (Fisher).

Authors:  Y A Knirel; E V Vinogradov; A S Shashkov; B A Dmitriev; N K Kochetkov; E S Stanislavsky; G M Mashilova
Journal:  Eur J Biochem       Date:  1985-08-01

8.  Structural and functional studies of QdtC: an N-acetyltransferase required for the biosynthesis of dTDP-3-acetamido-3,6-dideoxy-alpha-D-glucose.

Authors:  James B Thoden; Paul D Cook; Christina Schäffer; Paul Messner; Hazel M Holden
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

9.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  16 in total

1.  Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.

Authors:  Janice M Reimer; Martin N Aloise; Paul M Harrison; T Martin Schmeing
Journal:  Nature       Date:  2016-01-14       Impact factor: 49.962

2.  Biochemical Characterization of WbkC, an N-Formyltransferase from Brucella melitensis.

Authors:  Alexander S Riegert; Daniel P Chantigian; James B Thoden; Peter A Tipton; Hazel M Holden
Journal:  Biochemistry       Date:  2017-07-05       Impact factor: 3.162

3.  Molecular architecture of an N-formyltransferase from Salmonella enterica O60.

Authors:  Colin R Woodford; James B Thoden; Hazel M Holden
Journal:  J Struct Biol       Date:  2017-03-02       Impact factor: 2.867

4.  Molecular structure of an N-formyltransferase from Providencia alcalifaciens O30.

Authors:  Nicholas A Genthe; James B Thoden; Matthew M Benning; Hazel M Holden
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

5.  Biochemical Investigation of Rv3404c from Mycobacterium tuberculosis.

Authors:  Murray M Dunsirn; James B Thoden; Michel Gilbert; Hazel M Holden
Journal:  Biochemistry       Date:  2017-07-14       Impact factor: 3.162

6.  Characterization of the dTDP-Fuc3N and dTDP-Qui3N biosynthetic pathways in Campylobacter jejuni 81116.

Authors:  Zack Z Li; Alexander S Riegert; Marie-France Goneau; Anna M Cunningham; Evgeny Vinogradov; Jianjun Li; Ian C Schoenhofen; James B Thoden; Hazel M Holden; Michel Gilbert
Journal:  Glycobiology       Date:  2017-04-01       Impact factor: 4.313

7.  Structure of the Escherichia coli ArnA N-formyltransferase domain in complex with N(5) -formyltetrahydrofolate and UDP-Ara4N.

Authors:  Nicholas A Genthe; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2016-05-17       Impact factor: 6.725

Review 8.  Enzymes required for the biosynthesis of N-formylated sugars.

Authors:  Hazel M Holden; James B Thoden; Michel Gilbert
Journal:  Curr Opin Struct Biol       Date:  2016-05-20       Impact factor: 6.809

9.  The Mycobacterium tuberculosis complex has a pathway for the biosynthesis of 4-formamido-4,6-dideoxy-d-glucose.

Authors:  Haley A Brown; Evgeny Vinogradov; Michel Gilbert; Hazel M Holden
Journal:  Protein Sci       Date:  2018-07-18       Impact factor: 6.725

10.  PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase.

Authors:  Nikola Kenjić; Matthew R Hoag; Garrett C Moraski; Carol A Caperelli; Graham R Moran; Audrey L Lamb
Journal:  Arch Biochem Biophys       Date:  2019-01-26       Impact factor: 4.013

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.