Literature DB >> 23897469

Mitigation of X-ray damage in macromolecular crystallography by submicrometre line focusing.

Y Zou Finfrock1, Edward A Stern, R W Alkire, Joshua J Kas, Kenneth Evans-Lutterodt, Aaron Stein, Norma Duke, Krzysztof Lazarski, Andrzej Joachimiak.   

Abstract

Reported here are measurements of the penetration depth and spatial distribution of photoelectron (PE) damage excited by 18.6 keV X-ray photons in a lysozyme crystal with a vertical submicrometre line-focus beam of 0.7 µm full-width half-maximum (FWHM). The experimental results determined that the penetration depth of PEs is 5 ± 0.5 µm with a monotonically decreasing spatial distribution shape, resulting in mitigation of diffraction signal damage. This does not agree with previous theoretical predication that the mitigation of damage requires a peak of damage outside the focus. A new improved calculation provides some qualitative agreement with the experimental results, but significant errors still remain. The mitigation of radiation damage by line focusing was measured experimentally by comparing the damage in the X-ray-irradiated regions of the submicrometre focus with the large-beam case under conditions of equal exposure and equal volumes of the protein crystal, and a mitigation factor of 4.4 ± 0.4 was determined. The mitigation of radiation damage is caused by spatial separation of the dominant PE radiation-damage component from the crystal region of the line-focus beam that contributes the diffraction signal. The diffraction signal is generated by coherent scattering of incident X-rays (which introduces no damage), while the overwhelming proportion of damage is caused by PE emission as X-ray photons are absorbed.

Entities:  

Keywords:  X-ray damage mitigation; photoelectrons; submicrometre line focusing

Mesh:

Substances:

Year:  2013        PMID: 23897469     DOI: 10.1107/S0907444913009335

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  Imaging local electric fields produced upon synchrotron X-ray exposure.

Authors:  Christopher M Dettmar; Justin A Newman; Scott J Toth; Michael Becker; Robert F Fischetti; Garth J Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-31       Impact factor: 11.205

2.  FMX - the Frontier Microfocusing Macromolecular Crystallography Beamline at the National Synchrotron Light Source II.

Authors:  Dieter K Schneider; Wuxian Shi; Babak Andi; Jean Jakoncic; Yuan Gao; Dileep K Bhogadi; Stuart F Myers; Bruno Martins; John M Skinner; Jun Aishima; Kun Qian; Herbert J Bernstein; Edwin O Lazo; Thomas Langdon; John Lara; Grace Shea-McCarthy; Mourad Idir; Lei Huang; Oleg Chubar; Robert M Sweet; Lonny E Berman; Sean McSweeney; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2021-02-25       Impact factor: 2.616

Review 3.  Synchrotron radiation macromolecular crystallography: science and spin-offs.

Authors:  John R Helliwell; Edward P Mitchell
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

4.  Bragg coherent diffraction imaging and metrics for radiation damage in protein micro-crystallography.

Authors:  H D Coughlan; C Darmanin; H J Kirkwood; N W Phillips; D Hoxley; J N Clark; D J Vine; F Hofmann; R J Harder; E Maxey; B Abbey
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

5.  Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams.

Authors:  Matthew A Warkentin; Hakan Atakisi; Jesse B Hopkins; Donald Walko; Robert E Thorne
Journal:  IUCrJ       Date:  2017-10-13       Impact factor: 4.769

6.  Resolution and dose dependence of radiation damage in biomolecular systems.

Authors:  Hakan Atakisi; Lauren Conger; David W Moreau; Robert E Thorne
Journal:  IUCrJ       Date:  2019-09-18       Impact factor: 4.769

7.  Measuring energy-dependent photoelectron escape in microcrystals.

Authors:  Selina L S Storm; Adam D Crawshaw; Nicholas E Devenish; Rachel Bolton; David R Hall; Ivo Tews; Gwyndaf Evans
Journal:  IUCrJ       Date:  2020-01-01       Impact factor: 4.769

8.  Doses for experiments with microbeams and microcrystals: Monte Carlo simulations in RADDOSE-3D.

Authors:  Joshua L Dickerson; Elspeth F Garman
Journal:  Protein Sci       Date:  2020-08-18       Impact factor: 6.725

  8 in total

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