Literature DB >> 23885130

Motion of a Cylindrical Dielectric Boundary.

Li-Tien Cheng1, Bo Li, Michael White, Shenggao Zhou.   

Abstract

The interplay between geometry and electrostatics contributes significantly to hydrophobic interactions of biomolecules in an aqueous solution. With an implicit solvent, such a system can be described macroscopically by the dielectric boundary that separates the high-dielectric solvent from low-dielectric solutes. This work concerns the motion of a model cylindrical dielectric boundary as the steepest descent of a free-energy functional that consists of both the surface and electrostatic energies. The effective dielectric boundary force is defined and an explicit formula of the force is obtained. It is found that such a force always points from the solvent region to solute region. In the case that the interior of a cylinder is of a lower dielectric, the motion of the dielectric boundary is initially driven dominantly by the surface force but is then driven inward quickly to the cylindrical axis by both the surface and electrostatic forces. In the case that the interior of a cylinder is of a higher dielectric, the competition between the geometrical and electrostatic contributions leads to the existence of equilibrium boundaries that are circular cylinders. Linear stability analysis is presented to show that such an equilibrium is only stable for a perturbation with a wavenumber larger than a critical value. Numerical simulations are reported for both of the cases, confirming the analysis on the role of each component of the driving force. Implications of the mathematical findings to the understanding of charged molecular systems are discussed.

Entities:  

Keywords:  Charged molecules; dielectric boundaries; effective dielectric boundary force; electrostatic energy; linear stability; surface energy

Year:  2013        PMID: 23885130      PMCID: PMC3718573          DOI: 10.1137/120867986

Source DB:  PubMed          Journal:  SIAM J Appl Math        ISSN: 0036-1399            Impact factor:   2.080


  16 in total

1.  Observation of a dewetting transition in the collapse of the melittin tetramer.

Authors:  Pu Liu; Xuhui Huang; Ruhong Zhou; B J Berne
Journal:  Nature       Date:  2005-09-01       Impact factor: 49.962

2.  Hydrophobicity of protein surfaces: Separating geometry from chemistry.

Authors:  Nicolas Giovambattista; Carlos F Lopez; Peter J Rossky; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

3.  Application of the level-set method to the implicit solvation of nonpolar molecules.

Authors:  Li-Tien Cheng; Joachim Dzubiella; J Andrew McCammon; Bo Li
Journal:  J Chem Phys       Date:  2007-08-28       Impact factor: 3.488

Review 4.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

5.  Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach.

Authors:  Shenggao Zhou; Zhongming Wang; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-08-01

6.  Yukawa-Field Approximation of Electrostatic Free Energy and Dielectric Boundary Force.

Authors:  Hsiao-Bing Cheng; Li-Tien Cheng; Bo Li
Journal:  Nonlinearity       Date:  2011-11

7.  Hydrophobic collapse in multidomain protein folding.

Authors:  Ruhong Zhou; Xuhui Huang; Claudio J Margulis; Bruce J Berne
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

8.  Coupling the Level-Set Method with Molecular Mechanics for Variational Implicit Solvation of Nonpolar Molecules.

Authors:  Li-Tien Cheng; Yang Xie; Joachim Dzubiella; J Andrew McCammon; Jianwei Che; Bo Li
Journal:  J Chem Theory Comput       Date:  2009-02-10       Impact factor: 6.006

9.  Interfaces and hydrophobic interactions in receptor-ligand systems: A level-set variational implicit solvent approach.

Authors:  Li-Tien Cheng; Zhongming Wang; Piotr Setny; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2009-10-14       Impact factor: 3.488

10.  Level-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation.

Authors:  Zhongming Wang; Jianwei Che; Li-Tien Cheng; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2011-12-19       Impact factor: 6.006

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  4 in total

1.  STABILITY OF A CYLINDRICAL SOLUTE-SOLVENT INTERFACE: EFFECT OF GEOMETRY, ELECTROSTATICS, AND HYDRODYNAMICS.

Authors:  B O Li; Hui Sun; Shenggao Zhou
Journal:  SIAM J Appl Math       Date:  2015-05-05       Impact factor: 2.080

2.  DIFFUSED SOLUTE-SOLVENT INTERFACE WITH POISSON-BOLTZMANN ELECTROSTATICS: FREE-ENERGY VARIATION AND SHARP-INTERFACE LIMIT.

Authors:  B O Li; Yuan Liu
Journal:  SIAM J Appl Math       Date:  2015-09-15       Impact factor: 2.080

3.  LS-VISM: A software package for analysis of biomolecular solvation.

Authors:  Shenggao Zhou; Li-Tien Cheng; Hui Sun; Jianwei Che; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Comput Chem       Date:  2015-03-12       Impact factor: 3.376

4.  Variational Implicit Solvation with Poisson-Boltzmann Theory.

Authors:  Shenggao Zhou; Li-Tien Cheng; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2014-02-21       Impact factor: 6.006

  4 in total

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