Literature DB >> 23880758

Transient reduction of 5-methylcytosine and 5-hydroxymethylcytosine is associated with active DNA demethylation during regeneration of zebrafish fin.

Kentaro Hirose1, Nobuyoshi Shimoda, Yutaka Kikuchi.   

Abstract

Although dedifferentiation, transformation of differentiated cells into progenitor cells, is a critical step in the regeneration of amphibians and fish, the molecular mechanisms underlying this process, including epigenetic changes, remain unclear. Dot blot assays and immunohistochemical analyses revealed that, during regeneration of zebrafish fin, the levels of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) are transiently reduced in blastema cells and cells adjacent to the amputation plane at 30 h post-amputation (hpa), and the level of 5mC, but not 5hmC, is almost restored by 72 hpa. We observed that the dedifferentiated cells showed reduced levels of 5mC and 5hmC independent of cell proliferation by 24 hpa. Furthermore, expressions of the proposed demethylation- and DNA repair-related genes were detected during fin regeneration. Taken together, our findings illustrate that the transient reduction of 5mC and 5hmC in dedifferentiated cells is associated with active demethylation during regeneration of zebrafish fin.

Entities:  

Keywords:  5-hydroxymethylcytosine; 5-methylcytosine; active DNA demethylation; fin regeneration; zebrafish

Mesh:

Substances:

Year:  2013        PMID: 23880758      PMCID: PMC3883767          DOI: 10.4161/epi.25653

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  28 in total

1.  Injury-dependent Müller glia and ganglion cell reprogramming during tissue regeneration requires Apobec2a and Apobec2b.

Authors:  Curtis Powell; Fairouz Elsaeidi; Daniel Goldman
Journal:  J Neurosci       Date:  2012-01-18       Impact factor: 6.167

Review 2.  Active DNA demethylation by Gadd45 and DNA repair.

Authors:  Christof Niehrs; Andrea Schäfer
Journal:  Trends Cell Biol       Date:  2012-02-15       Impact factor: 20.808

3.  5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development.

Authors:  Rimple D Almeida; Matthew Loose; Virginie Sottile; Elena Matsa; Chris Denning; Lorraine Young; Andrew D Johnson; Martin Gering; Alexey Ruzov
Journal:  Epigenetics       Date:  2012-04-01       Impact factor: 4.528

Review 4.  Epigenetic reprogramming during tissue regeneration.

Authors:  Tomonori Katsuyama; Renato Paro
Journal:  FEBS Lett       Date:  2011-05-08       Impact factor: 4.124

Review 5.  Active DNA demethylation: many roads lead to Rome.

Authors:  Susan C Wu; Yi Zhang
Journal:  Nat Rev Mol Cell Biol       Date:  2010-08-04       Impact factor: 94.444

6.  Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens.

Authors:  Rachel K Tittle; Ryan Sze; Anthony Ng; Richard J Nuckels; Mary E Swartz; Ryan M Anderson; Justin Bosch; Didier Y R Stainier; Johann K Eberhart; Jeffrey M Gross
Journal:  Dev Biol       Date:  2010-11-30       Impact factor: 3.582

Review 7.  The cellular basis for animal regeneration.

Authors:  Elly M Tanaka; Peter W Reddien
Journal:  Dev Cell       Date:  2011-07-19       Impact factor: 12.270

Review 8.  DNA methylation: TET proteins-guardians of CpG islands?

Authors:  Kristine Williams; Jesper Christensen; Kristian Helin
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

Review 9.  Tet family proteins and 5-hydroxymethylcytosine in development and disease.

Authors:  Li Tan; Yujiang Geno Shi
Journal:  Development       Date:  2012-06       Impact factor: 6.868

Review 10.  Uncovering the role of 5-hydroxymethylcytosine in the epigenome.

Authors:  Miguel R Branco; Gabriella Ficz; Wolf Reik
Journal:  Nat Rev Genet       Date:  2011-11-15       Impact factor: 53.242

View more
  11 in total

Review 1.  Zebrafish Discoveries in Cancer Epigenetics.

Authors:  Yelena Chernyavskaya; Brandon Kent; Kirsten C Sadler
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

2.  Can laboratory model systems instruct human limb regeneration?

Authors:  Ben D Cox; Maximina H Yun; Kenneth D Poss
Journal:  Development       Date:  2019-10-02       Impact factor: 6.868

Review 3.  The retinal pigment epithelium: Development, injury responses, and regenerative potential in mammalian and non-mammalian systems.

Authors:  Stephanie M George; Fangfang Lu; Mishal Rao; Lyndsay L Leach; Jeffrey M Gross
Journal:  Prog Retin Eye Res       Date:  2021-04-23       Impact factor: 21.198

4.  Chronic liver inflammation modifies DNA methylation at the precancerous stage of murine hepatocarcinogenesis.

Authors:  Evgeniy Stoyanov; Guy Ludwig; Lina Mizrahi; Devorah Olam; Temima Schnitzer-Perlman; Elena Tasika; Gabriele Sass; Gisa Tiegs; Yong Jiang; Ting Nie; James Kohler; Raymond F Schinazi; Paula M Vertino; Howard Cedar; Eithan Galun; Daniel Goldenberg
Journal:  Oncotarget       Date:  2015-05-10

Review 5.  The art of fin regeneration in zebrafish.

Authors:  Catherine Pfefferli; Anna Jaźwińska
Journal:  Regeneration (Oxf)       Date:  2015-05-19

6.  Leucine/glutamine and v-ATPase/lysosomal acidification via mTORC1 activation are required for position-dependent regeneration.

Authors:  Kazuya Takayama; Akihiko Muto; Yutaka Kikuchi
Journal:  Sci Rep       Date:  2018-05-29       Impact factor: 4.379

7.  Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility.

Authors:  Hyung Joo Lee; Yiran Hou; Yujie Chen; Zea Z Dailey; Aiyana Riddihough; Hyo Sik Jang; Ting Wang; Stephen L Johnson
Journal:  Genome Biol       Date:  2020-02-27       Impact factor: 13.583

8.  Mechanistic target of rapamycin complex 1 signaling regulates cell proliferation, cell survival, and differentiation in regenerating zebrafish fins.

Authors:  Kentaro Hirose; Taishi Shiomi; Shunya Hozumi; Yutaka Kikuchi
Journal:  BMC Dev Biol       Date:  2014-12-06       Impact factor: 1.978

9.  DNA demethylation is a driver for chick retina regeneration.

Authors:  Agustín Luz-Madrigal; Erika Grajales-Esquivel; Jared Tangeman; Sarah Kosse; Lin Liu; Kai Wang; Andrew Fausey; Chun Liang; Panagiotis A Tsonis; Katia Del Rio-Tsonis
Journal:  Epigenetics       Date:  2020-04-14       Impact factor: 4.528

10.  DNA methylation atlas and machinery in the developing and regenerating annelid Platynereis dumerilii.

Authors:  Anabelle Planques; Pierre Kerner; Laure Ferry; Christoph Grunau; Eve Gazave; Michel Vervoort
Journal:  BMC Biol       Date:  2021-08-03       Impact factor: 7.431

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.