| Literature DB >> 23858352 |
Robert A Borgon1, Nicole Verity, Ken Teter.
Abstract
Undergraduate research can make a positive impact on science education. Unfortunately, the one student-one mentor paradigm of undergraduate research generates a wide range of variability in the student's experience and further limits its availability to a select few students. In contrast, a single faculty member can offer multiple undergraduate teaching positions that provide a consistent experience for the student. We attempted to combine the undergraduate research and teaching experiences in an internship practicum called Peer Instruction and Laboratory Occupational Training (PILOT). Students enrolled in PILOT served as teaching assistants for the upper division Quantitative Biological Methods (QBM) laboratory course. In addition, PILOT students worked on an independent lab project that provided them with hands-on training and supported the QBM course. The development of presentation and teaching skills was also emphasized in PILOT. These activities were designed to improve student communication skills, lab skills, and knowledge of molecular biology content. Here, we describe the PILOT curriculum and report the results of an anonymous assessment survey administered to 75 students who had completed PILOT in the previous five semesters. Our data indicate that PILOT provides an effective format to expand undergraduate opportunities for research and teaching experiences.Entities:
Year: 2013 PMID: 23858352 PMCID: PMC3706164 DOI: 10.1128/jmbe.v14i1.474
Source DB: PubMed Journal: J Microbiol Biol Educ ISSN: 1935-7877
Comparison of the QBM lab and PILOT schedules.
| Micropipetting, Centrifugation, Spectrophotometry | Course overview, lab tour, Lab 1 training, group assignments, message board assignments, lecture on teaching and presenting | |
| Protein Quantification | Student presentations on Protein Quantification, QBM Assignment #1 review, hand out Research Paper #1 and assign speakers, choose projects | |
| Enzyme Assays, Making Buffers | Student presentations on Enzyme Assays, Research Paper #1 discussion, buffer-making training | |
| Size Exclusion Chromatography | Student presentations on Chromatography, chromatography machine training, reading assignment, QBM Assignment #1 correcting, project review | |
| Ion Exchange Chromatography | Student presentations on Chromatography, group discussion on previous reading assignment | |
| Sample Normalization, Purification Table | Student presentations on Purification Table, sample purification table group assignment, project review | |
| SDS-PAGE, Western Transfer | Student presentations on SDS-PAGE, QBM Assignment #2 review, SDS-PAGE and Western Transfer training, make extra gels | |
| Western Blotting, Crystallization | Student presentations on Western Blotting, Crystallization training, develop a critical thinking quiz question, project review | |
| DNA Ligation, Transformation | Student presentations on Ligation and Transformation, reading assignment, QBM Assignment #2 correcting | |
| Miniprep, DNA Quantification, PCR | Student presentations on Miniprep and PCR, QBM Assignment #3 review, group discussion on previous reading assignment, hand out Research Paper #2 and assign speakers, project review | |
| Restriction Enzyme Digestion, Agarose Gel Electrophoresis | Student presentations on Restriction Enzymes and Electrophoresis, Research Paper #2 discussion | |
| No Lab | Complete projects, QBM Assignment #3 correcting | |
| No Lab | Project presentations |
Peer instructional activities.
| Practice lecturing upcoming material | 3–4 Students Weekly | PILOT |
| Engage students in lab, answer questions, solve problems | Weekly | QBM |
| Teach and answer questions on advanced class assignments | Weekly | QBM |
| Class message board—answer and post questions | Weekly | Online |
| Teach students how the lab equipment runs | Weekly | QBM |
| Oversee quiz | Weekly | QBM |
| Teach students to make buffers, dilutions, and pH solutions | Three times | QBM |
| Correct assignments and give students feedback | Three times | PILOT |
| Critical thinking assignments on upcoming lab | Three times | PILOT |
| Journal article review and presentation | Twice | PILOT |
| Help students load DNA and protein gels | Twice | QBM |
| Lecture lab material to students | Once or more | QBM |
| Verify that students can pipet correctly | Once | QBM |
| Provide sample quiz questions | Once | PILOT |
| Presentation on a faculty member’s research | Once | PILOT |
| Presentation on student’s own research | Once | PILOT |
| Group discussion on a scientific news article | Once | PILOT |
| Group discussion on a review article | Once | PILOT |
| Sample lab report grading | Once | PILOT |
| Teach students protein crystallization | Once | QBM |
Laboratory training activities.
| Laboratory research project | Weekly | PILOT and QBM |
| Updates on lab projects, discussion of goals | Weekly | PILOT |
| Train on lab equipment that students will run in lab | Weekly | PILOT |
| Manage and troubleshoot various lab equipment | Weekly | QBM |
| Teach/train students on the proper use of lab equipment | Weekly | QBM |
| Set up lab | Weekly | PILOT and QBM |
| Prepare reagents for lab | Weekly | PILOT and QBM |
| Help clean up at end of lab | Weekly | QBM |
| Clean glassware | Weekly | QBM |
| Oversee buffer training of students | Three times | QBM |
| Make extra gels for students | Once | PILOT |
Student projects.
| Add an additional reagent to the pipetting lab and test the absorbance | Beginner |
| Develop a protocol to test pipetting accuracy using the scale | Beginner |
| Create new standard curves for various experiments used by the students | Beginner |
| Test the effect of freezing/thawing on GST’s activity | Beginner |
| Test the effect of the age of reagents on GST’s activity | Beginner |
| Place various dyes in the stacking gel to improve SDS-PAGE loading | Beginner |
| Test the effect of reduced blocking/primary/secondary times on the western blot | Beginner |
| Develop a protocol for using the plate reader for protein quantification | Intermediate |
| Compare the Bradford, Lowry, and other protein quantification assays | Intermediate |
| Develop a molecular weight standard curve for the size exclusion column used in the lab | Intermediate |
| Develop a thin layer chromatography protocol | Intermediate |
| Test various SDS-PAGE acrylamide concentrations to optimize the gels used in the lab | Intermediate |
| Purify genomic DNA from fruits and vegetables using household chemicals | Intermediate |
| Make the | Advanced |
| Determine the concentration of caffeine or tryptophan via spectrophotometry | Advanced |
| Develop a lab using the BCA method for protein quantification | Advanced |
| Clone a GST-GFP fusion protein, express it, purify it, and quantify it | Advanced |
| Determine the Km of GST | Advanced |
| Test the impact of inhibitors on GST’s activity | Advanced |
| Purify GST on an affinity column and develop a protocol for use in the lab | Advanced |
| Develop a lysozyme crystallization protocol | Advanced |
| Develop an ELISA protocol for GST | Advanced |
| Design PCR primers to a plasmid and amplify the gene insert used in the lab | Advanced |
| Generate and screen for mutant proteins via PCR and DNA sequencing | Advanced |
| Develop a cell culture lab | Advanced |
| Develop a lab using quantitative PCR | Advanced |
| Develop a bioinformatics lab | Advanced |
| Clone GST into a different vector using PCR, digestion, ligation, and transformation | Advanced |
FIGURE 1Reasons for enrolling in PILOT.
FIGURE 2(A) Undergraduate research status prior to enrolling in PILOT; primary reasons for enrollment in PILOT for students (B) with prior research experience and (C) without prior research experience.
Student evaluation of PILOT experiences.
| 0.0% | 0.0% | 0.0% | 18.9% | 81.1% | 74 | |
| 0.0% | 0.0% | 0.0% | 17.6% | 82.4% | 74 | |
| 1.4% | 0.0% | 2.7% | 35.1% | 60.8% | 74 | |
| 0.0% | 0.0% | 1.4% | 20.3% | 78.4% | 74 | |
| 0.0% | 1.4% | 8.2% | 28.8% | 61.6% | 73 | |
| 0.0% | 0.0% | 0.0% | 20.3% | 79.7% | 74 |
Impact of PILOT on student confidence.
| 0.0% | 0.0% | 2.7% | 45.9% | 51.4% | 74 | |
| 0.0% | 0.0% | 13.5% | 48.6% | 37.8% | 74 | |
| 0.0% | 1.4% | 24.7% | 38.4% | 35.6% | 73 | |
| 0.0% | 0.0% | 13.5% | 39.2% | 47.3% | 74 | |
| 0.0% | 0.0% | 16.2% | 32.4% | 51.4% | 74 | |
| 0.0% | 0.0% | 28.4% | 40.5% | 31.1% | 74 | |
| 0.0% | 0.0% | 20.5% | 46.6% | 32.9% | 73 | |
| 0.0% | 0.0% | 12.2% | 37.8% | 50.0% | 74 |
Importance of PILOT activities.
| 0.0% | 0.0% | 0.0% | 24.3% | 75.7% | 74 | |
| 0.0% | 1.4% | 5.4% | 40.5% | 52.7% | 74 | |
| 2.7% | 4.1% | 5.4% | 32.4% | 55.4% | 74 | |
| 0.0% | 1.4% | 6.8% | 21.6% | 70.3% | 74 | |
| 1.4% | 1.4% | 1.4% | 14.9% | 81.1% | 74 | |
| 2.7% | 0.0% | 8.1% | 41.9% | 47.3% | 74 | |
| 0.0% | 0.0% | 4.1% | 29.7% | 66.2% | 74 |
FIGURE 3The most valuable part of the PILOT experience.
FIGURE 4The most difficult part of the PILOT experience.
FIGURE 5The most surprising aspect of the PILOT experience.