Literature DB >> 23851075

Left ventricle segmentation in MRI via convex relaxed distribution matching.

Cyrus M S Nambakhsh1, Jing Yuan, Kumaradevan Punithakumar, Aashish Goela, Martin Rajchl, Terry M Peters, Ismail Ben Ayed.   

Abstract

A fundamental step in the diagnosis of cardiovascular diseases, automatic left ventricle (LV) segmentation in cardiac magnetic resonance images (MRIs) is still acknowledged to be a difficult problem. Most of the existing algorithms require either extensive training or intensive user inputs. This study investigates fast detection of the left ventricle (LV) endo- and epicardium surfaces in cardiac MRI via convex relaxation and distribution matching. The algorithm requires a single subject for training and a very simple user input, which amounts to a single point (mouse click) per target region (cavity or myocardium). It seeks cavity and myocardium regions within each 3D phase by optimizing two functionals, each containing two distribution-matching constraints: (1) a distance-based shape prior and (2) an intensity prior. Based on a global measure of similarity between distributions, the shape prior is intrinsically invariant with respect to translation and rotation. We further introduce a scale variable from which we derive a fixed-point equation (FPE), thereby achieving scale-invariance with only few fast computations. The proposed algorithm relaxes the need for costly pose estimation (or registration) procedures and large training sets, and can tolerate shape deformations, unlike template (or atlas) based priors. Our formulation leads to a challenging problem, which is not directly amenable to convex-optimization techniques. For each functional, we split the problem into a sequence of sub-problems, each of which can be solved exactly and globally via a convex relaxation and the augmented Lagrangian method. Unlike related graph-cut approaches, the proposed convex-relaxation solution can be parallelized to reduce substantially the computational time for 3D domains (or higher), extends directly to high dimensions, and does not have the grid-bias problem. Our parallelized implementation on a graphics processing unit (GPU) demonstrates that the proposed algorithm requires about 3.87 s for a typical cardiac MRI volume, a speed-up of about five times compared to a standard implementation. We report a performance evaluation over 400 volumes acquired from 20 subjects, which shows that the obtained 3D surfaces correlate with independent manual delineations. We further demonstrate experimentally that (1) the performance of the algorithm is not significantly affected by the choice of the training subject and (2) the shape description we use does not change significantly from one subject to another. These results support the fact that a single subject is sufficient for training the proposed algorithm.
Copyright © 2013 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  3D segmentation; Cardiac MRI; Convex-relaxation optimization; Fixed-point optimization; Graphics processing unit

Mesh:

Year:  2013        PMID: 23851075     DOI: 10.1016/j.media.2013.05.002

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  10 in total

1.  Robust and automatic diagnosis of the intraventricular mechanical dyssynchrony for the left ventricle in cardiac magnetic resonance images.

Authors:  Zhenzhou Wang
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-03-27       Impact factor: 2.924

2.  Automatic localization of the left ventricular blood pool centroid in short axis cardiac cine MR images.

Authors:  Li Kuo Tan; Yih Miin Liew; Einly Lim; Yang Faridah Abdul Aziz; Kok Han Chee; Robert A McLaughlin
Journal:  Med Biol Eng Comput       Date:  2017-11-17       Impact factor: 2.602

3.  Left Ventricle Segmentation in Cardiac MR Images via an Improved ResUnet.

Authors:  Shengzhou Xu; Haoran Lu; Shiyu Cheng; Chengdan Pei
Journal:  Int J Biomed Imaging       Date:  2022-07-08

4.  Myocardial Infarct Segmentation From Magnetic Resonance Images for Personalized Modeling of Cardiac Electrophysiology.

Authors:  Natalia A Trayanova; Fijoy Vadakkumpadan; Eranga Ukwatta; Hermenegild Arevalo; Kristina Li; Jing Yuan; Wu Qiu; Peter Malamas; Katherine C Wu
Journal:  IEEE Trans Med Imaging       Date:  2015-12-25       Impact factor: 10.048

5.  DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks.

Authors:  Martin Rajchl; Matthew C H Lee; Ozan Oktay; Konstantinos Kamnitsas; Jonathan Passerat-Palmbach; Wenjia Bai; Mellisa Damodaram; Mary A Rutherford; Joseph V Hajnal; Bernhard Kainz; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2016-11-09       Impact factor: 10.048

6.  Detection of subjects and brain regions related to Alzheimer's disease using 3D MRI scans based on eigenbrain and machine learning.

Authors:  Yudong Zhang; Zhengchao Dong; Preetha Phillips; Shuihua Wang; Genlin Ji; Jiquan Yang; Ti-Fei Yuan
Journal:  Front Comput Neurosci       Date:  2015-06-02       Impact factor: 2.380

7.  Automatic segmentation of the left ventricle in cardiac MRI using local binary fitting model and dynamic programming techniques.

Authors:  Huaifei Hu; Zhiyong Gao; Liman Liu; Haihua Liu; Junfeng Gao; Shengzhou Xu; Wei Li; Lu Huang
Journal:  PLoS One       Date:  2014-12-11       Impact factor: 3.240

Review 8.  An Overview on Image Registration Techniques for Cardiac Diagnosis and Treatment.

Authors:  Azira Khalil; Siew-Cheok Ng; Yih Miin Liew; Khin Wee Lai
Journal:  Cardiol Res Pract       Date:  2018-08-08       Impact factor: 1.866

9.  A Deep Learning Segmentation Approach in Free-Breathing Real-Time Cardiac Magnetic Resonance Imaging.

Authors:  Fan Yang; Yan Zhang; Pinggui Lei; Lihui Wang; Yuehong Miao; Hong Xie; Zhu Zeng
Journal:  Biomed Res Int       Date:  2019-07-30       Impact factor: 3.411

Review 10.  A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging.

Authors:  Peng Peng; Karim Lekadir; Ali Gooya; Ling Shao; Steffen E Petersen; Alejandro F Frangi
Journal:  MAGMA       Date:  2016-01-25       Impact factor: 2.310

  10 in total

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