Literature DB >> 23846467

Fast acquisition and reconstruction of optical coherence tomography images via sparse representation.

Leyuan Fang, Shutao Li, Ryan P McNabb, Qing Nie, Anthony N Kuo, Cynthia A Toth, Joseph A Izatt, Sina Farsiu.   

Abstract

In this paper, we present a novel technique, based on compressive sensing principles, for reconstruction and enhancement of multi-dimensional image data. Our method is a major improvement and generalization of the multi-scale sparsity based tomographic denoising (MSBTD) algorithm we recently introduced for reducing speckle noise. Our new technique exhibits several advantages over MSBTD, including its capability to simultaneously reduce noise and interpolate missing data. Unlike MSBTD, our new method does not require an a priori high-quality image from the target imaging subject and thus offers the potential to shorten clinical imaging sessions. This novel image restoration method, which we termed sparsity based simultaneous denoising and interpolation (SBSDI), utilizes sparse representation dictionaries constructed from previously collected datasets. We tested the SBSDI algorithm on retinal spectral domain optical coherence tomography images captured in the clinic. Experiments showed that the SBSDI algorithm qualitatively and quantitatively outperforms other state-of-the-art methods.

Entities:  

Mesh:

Year:  2013        PMID: 23846467      PMCID: PMC4000559          DOI: 10.1109/TMI.2013.2271904

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  44 in total

1.  General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery.

Authors:  Alexander Wong; Akshaya Mishra; Kostadinka Bizheva; David A Clausi
Journal:  Opt Express       Date:  2010-04-12       Impact factor: 3.894

2.  A data-driven sparse GLM for fMRI analysis using sparse dictionary learning with MDL criterion.

Authors:  Kangjoo Lee; Sungho Tak; Jong Chul Ye
Journal:  IEEE Trans Med Imaging       Date:  2010-12-06       Impact factor: 10.048

3.  Comparison of PDE-based nonlinear diffusion approaches for image enhancement and denoising in optical coherence tomography.

Authors:  Harry M Salinas; Delia Cabrera Fernández
Journal:  IEEE Trans Med Imaging       Date:  2007-06       Impact factor: 10.048

4.  A new method for registration-based medical image interpolation.

Authors:  David H Frakes; Lakshmi P Dasi; Kerem Pekkan; Hiroumi D Kitajima; Kartik Sundareswaran; Ajit P Yoganathan; Mark J T Smith
Journal:  IEEE Trans Med Imaging       Date:  2008-03       Impact factor: 10.048

5.  A pyramid approach to subpixel registration based on intensity.

Authors:  P Thévenaz; U E Ruttimann; M Unser
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

6.  Quantitative evaluation of transform domains for compressive sampling-based recovery of sparsely sampled volumetric OCT images.

Authors:  Andy Bo Wu; Evgeniy Lebed; Marinko V Sarunic; Mirza Faisal Beg
Journal:  IEEE Trans Biomed Eng       Date:  2012-05-15       Impact factor: 4.538

7.  Enhanced optical coherence tomography imaging by multiple scan averaging.

Authors:  B Sander; M Larsen; L Thrane; J L Hougaard; T M Jørgensen
Journal:  Br J Ophthalmol       Date:  2005-02       Impact factor: 4.638

8.  Low-dose X-ray CT reconstruction via dictionary learning.

Authors:  Qiong Xu; Hengyong Yu; Xuanqin Mou; Lei Zhang; Jiang Hsieh; Ge Wang
Journal:  IEEE Trans Med Imaging       Date:  2012-04-20       Impact factor: 10.048

9.  Distributed scanning volumetric SDOCT for motion corrected corneal biometry.

Authors:  Ryan P McNabb; Francesco Larocca; Sina Farsiu; Anthony N Kuo; Joseph A Izatt
Journal:  Biomed Opt Express       Date:  2012-08-10       Impact factor: 3.732

10.  Real-time high-speed volumetric imaging using compressive sampling optical coherence tomography.

Authors:  Mei Young; Evgeniy Lebed; Yifan Jian; Paul J Mackenzie; Mirza Faisal Beg; Marinko V Sarunic
Journal:  Biomed Opt Express       Date:  2011-08-24       Impact factor: 3.732

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  36 in total

Review 1.  State-of-the-art in retinal optical coherence tomography image analysis.

Authors:  Ahmadreza Baghaie; Zeyun Yu; Roshan M D'Souza
Journal:  Quant Imaging Med Surg       Date:  2015-08

Review 2.  Dry age-related macular degeneration: mechanisms, therapeutic targets, and imaging.

Authors:  Catherine Bowes Rickman; Sina Farsiu; Cynthia A Toth; Mikael Klingeborn
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-12-13       Impact factor: 4.799

3.  Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema.

Authors:  Stephanie J Chiu; Michael J Allingham; Priyatham S Mettu; Scott W Cousins; Joseph A Izatt; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2015-03-09       Impact factor: 3.732

4.  Automatic detection of the foveal center in optical coherence tomography.

Authors:  Bart Liefers; Freerk G Venhuizen; Vivian Schreur; Bram van Ginneken; Carel Hoyng; Sascha Fauser; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-10-23       Impact factor: 3.732

5.  Volumetric non-local-means based speckle reduction for optical coherence tomography.

Authors:  Carlos Cuartas-Vélez; René Restrepo; Brett E Bouma; Néstor Uribe-Patarroyo
Journal:  Biomed Opt Express       Date:  2018-06-26       Impact factor: 3.732

6.  3-D Adaptive Sparsity Based Image Compression With Applications to Optical Coherence Tomography.

Authors:  Leyuan Fang; Shutao Li; Xudong Kang; Joseph A Izatt; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2015-01-01       Impact factor: 10.048

7.  Fully automatic segmentation of fluorescein leakage in subjects with diabetic macular edema.

Authors:  Hossein Rabbani; Michael J Allingham; Priyatham S Mettu; Scott W Cousins; Sina Farsiu
Journal:  Invest Ophthalmol Vis Sci       Date:  2015-01-29       Impact factor: 4.799

8.  Application of Independent Component Analysis Techniques in Speckle Noise Reduction of Retinal OCT Images.

Authors:  Ahmadreza Baghaie; Roshan M D'Souza; Zeyun Yu
Journal:  Optik (Stuttg)       Date:  2016-08       Impact factor: 2.443

9.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

10.  Automatic segmentation of up to ten layer boundaries in SD-OCT images of the mouse retina with and without missing layers due to pathology.

Authors:  Pratul P Srinivasan; Stephanie J Heflin; Joseph A Izatt; Vadim Y Arshavsky; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2014-01-07       Impact factor: 3.732

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