| Literature DB >> 23843894 |
Abstract
Research performed during the last two decades has provided a wealth of information to highlight the role of the urokinase-type plasminogen activator receptor (Entities:
Keywords: CD87; PET imaging.; PLAUR; cancer; plasminogen activation; urokinase receptor
Mesh:
Substances:
Year: 2013 PMID: 23843894 PMCID: PMC3706690 DOI: 10.7150/thno.3791
Source DB: PubMed Journal: Theranostics ISSN: 1838-7640 Impact factor: 11.556
Figure 1. A composite molecular model representing the structure of human uPAR based on the crystal structure solved for uPAR•ATF complexes is shown to in panel A. Secondary structure elements are depicted as a cartoon representation, where the assembly of the three LU-domains in uPAR is evident from the color coding, yellow (DI), blue (DII), and red (DIII). A hypothetical model for the GPI-anchor, tethering uPAR to the cell surface, is shown in sticks. The molecular shape of uPAR is visualized by a semitransparent surface. In panel B, the corresponding complex with its natural ligand uPA is shown using a solid surface representation for uPAR and a cartoon representation of the receptor-binding fragment of uPA (ATF) used to crystallize the complex. The large hydrophobic ligand-binding cavity of uPAR is highlighted by the grey area delimited by the hatched black line using the following atomic color coding: grey (C), blue (N), red (O), and yellow (S). The inset in the bottom right corner shows a more detailed picture of the tight engagement and burial of the tip of the β-hairpin of GFD in uPA within the deepest region of the central cavity in uPAR.
Figure 2. A composite molecular model of the ATF•uPAR•SMB complex solved by X-ray crystallography is shown in panel A. The structure is rotated 90° compared to Figure 1, providing a “top view” of uPAR and moving the cell surface to the back of the picture. As in Figure 1, uPAR is shown in a composite semitransparent surface and cartoon representation. The bound ligands ATF (representing uPA) and SMB (representing vitronectin) are depicted in cartoon representations. The picture to the right shows the detailed binding interface between uPAR and SMB highlighting the key residues for this interaction in uPAR (R91 and W32) and SMB (F13, D22, Y27 and Y28).
Figure 3The first X-ray crystal structure solved for human uPAR is shown in panel A using a similar graphical setup as in the previous figures. In this case, uPAR is co-crystallized with a small peptide antagonist derived from AE105 (panel B), which is used as the uPAR-targeting moiety in the PET tracers discussed in this review. A more detailed representation of the peptide-uPAR binding interface is shown in panel C, where the helical nature of the bound peptide is evident (hydrogen bonds in yellow). The hotspot residues Cha2, F3, and W8 are shown, whereas the important L7 is partly hidden behind the α-helix of the bound peptide. Y6 represents the non-essential position to which the covalently linked mercury was attached for structure determination 5. The positions in uPAR that are covalently modified when W8 or F3 in the peptide antagonist is replaced by different photoaffinity labeling probes 51 are also depicted, illustrating the proximity of W8 to H251 (cyan) and of F3 to R53 and L66 (green).