Literature DB >> 23831028

Dido3 PHD modulates cell differentiation and division.

Jovylyn Gatchalian1, Agnes Fütterer, Scott B Rothbart, Qiong Tong, Hector Rincon-Arano, Ainhoa Sánchez de Diego, Mark Groudine, Brian D Strahl, Carlos Martínez-A, Karel H M van Wely, Tatiana G Kutateladze.   

Abstract

Death Inducer Obliterator 3 (Dido3) is implicated in the maintenance of stem cell genomic stability and tumorigenesis. Here, we show that Dido3 regulates the expression of stemness genes in embryonic stem cells through its plant homeodomain (PHD) finger. Binding of Dido3 PHD to histone H3K4me3 is disrupted by threonine phosphorylation that triggers Dido3 translocation from chromatin to the mitotic spindle. The crystal structure of Dido3 PHD in complex with H3K4me3 reveals an atypical aromatic-cage-like binding site that contains a histidine residue. Biochemical, structural, and mutational analyses of the binding mechanism identified the determinants of specificity and affinity and explained the inability of homologous PHF3 to bind H3K4me3. Together, our findings reveal a link between the transcriptional control in embryonic development and regulation of cell division.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23831028      PMCID: PMC3967714          DOI: 10.1016/j.celrep.2013.06.014

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  20 in total

1.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage.

Authors:  Hubert Kettenberger; Karim-Jean Armache; Patrick Cramer
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

3.  Dido disruption leads to centrosome amplification and mitotic checkpoint defects compromising chromosome stability.

Authors:  Varvara Trachana; Karel H M van Wely; Astrid Alonso Guerrero; Agnes Fütterer; Carlos Martínez-A
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

4.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Authors:  Pedro V Peña; Foteini Davrazou; Xiaobing Shi; Kay L Walter; Vladislav V Verkhusha; Or Gozani; Rui Zhao; Tatiana G Kutateladze
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

5.  In vitro phosphorylation of histone H3 at threonine 3 by Arabidopsis haspin is strongly influenced by posttranslational modifications of adjacent amino acids.

Authors:  Raheleh Karimi-Ashtiyani; Andreas Houben
Journal:  Mol Plant       Date:  2012-12-08       Impact factor: 13.164

6.  Death inducer obliterator protein 1 in the context of DNA regulation. Sequence analyses of distant homologues point to a novel functional role.

Authors:  Ana M Rojas; Luis Sanchez-Pulido; Agnes Fütterer; Karel H M van Wely; Carlos Martinez-A; Alfonso Valencia
Journal:  FEBS J       Date:  2005-07       Impact factor: 5.542

7.  Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.

Authors:  John R Horton; Anup K Upadhyay; Hank H Qi; Xing Zhang; Yang Shi; Xiaodong Cheng
Journal:  Nat Struct Mol Biol       Date:  2009-12-20       Impact factor: 15.369

8.  Dido gene expression alterations are implicated in the induction of hematological myeloid neoplasms.

Authors:  Agnes Fütterer; Miguel R Campanero; Esther Leonardo; Luis M Criado; Juana M Flores; Jesús M Hernández; Jesús F San Miguel; Carlos Martínez-A
Journal:  J Clin Invest       Date:  2005-08-25       Impact factor: 14.808

9.  Fluorescence in situ hybridization characterization of ider(20q) in myelodysplastic syndrome.

Authors:  N Douet-Guilbert; J L Laï; A Basinko; N Gueganic; J Andrieux; B Pollet; I Plantier; C Delattre; O Crépin; S Corm; M J Le Bris; F Morel; M De Braekeleer
Journal:  Br J Haematol       Date:  2008-10-21       Impact factor: 6.998

10.  Synaptonemal complex assembly and H3K4Me3 demethylation determine DIDO3 localization in meiosis.

Authors:  Ignacio Prieto; Anna Kouznetsova; Agnes Fütterer; Varvara Trachana; Esther Leonardo; Astrid Alonso Guerrero; Mercedes Cano Gamero; Cristina Pacios-Bras; Hervé Leh; Malcolm Buckle; Mónica Garcia-Gallo; Leonor Kremer; Antonio Serrano; Fernando Roncal; Juan Pablo Albar; José Luis Barbero; Carlos Martínez-A; Karel H M van Wely
Journal:  Chromosoma       Date:  2009-06-26       Impact factor: 4.316

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  26 in total

1.  Role of DIDO1 in Progression of Esophageal Squamous Cell Carcinoma.

Authors:  Mohammad Mahdi Forghanifard; Pegah Naeimi Khorasanizadeh; Mohammad Reza Abbaszadegan; Afsaneh Javdani Mallak; Meysam Moghbeli
Journal:  J Gastrointest Cancer       Date:  2020-03

Review 2.  Interpreting the language of histone and DNA modifications.

Authors:  Scott B Rothbart; Brian D Strahl
Journal:  Biochim Biophys Acta       Date:  2014-03-12

3.  Analysis of Histone Antibody Specificity with Peptide Microarrays.

Authors:  Evan M Cornett; Bradley M Dickson; Scott B Rothbart
Journal:  J Vis Exp       Date:  2017-08-01       Impact factor: 1.355

4.  Chromatin condensation and recruitment of PHD finger proteins to histone H3K4me3 are mutually exclusive.

Authors:  Jovylyn Gatchalian; Carmen Mora Gallardo; Stephen A Shinsky; Ruben Rosas Ospina; Andrea Mansilla Liendo; Krzysztof Krajewski; Brianna J Klein; Forest H Andrews; Brian D Strahl; Karel H M van Wely; Tatiana G Kutateladze
Journal:  Nucleic Acids Res       Date:  2016-03-25       Impact factor: 16.971

5.  The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation.

Authors:  Forest H Andrews; Erin K Shanle; Brian D Strahl; Tatiana G Kutateladze
Journal:  Transcription       Date:  2016

6.  A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.

Authors:  Adam H Tencer; Jovylyn Gatchalian; Brianna J Klein; Abid Khan; Yi Zhang; Brian D Strahl; Karel H M van Wely; Tatiana G Kutateladze
Journal:  Structure       Date:  2017-09-14       Impact factor: 5.006

7.  Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.

Authors:  Kerstin Kinkelin; Glenn G Wozniak; Scott B Rothbart; Michael Lidschreiber; Brian D Strahl; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

8.  Regulation of Methyllysine Readers through Phosphorylation.

Authors:  Forest H Andrews; Jovylyn Gatchalian; Krzysztof Krajewski; Brian D Strahl; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2016-01-06       Impact factor: 5.100

Review 9.  Towards understanding methyllysine readout.

Authors:  Catherine A Musselman; Sepideh Khorasanizadeh; Tatiana G Kutateladze
Journal:  Biochim Biophys Acta       Date:  2014-04-13

10.  The death-inducer obliterator 1 (Dido1) gene regulates embryonic stem cell self-renewal.

Authors:  Yinyin Liu; Hyeung Kim; Jiancong Liang; Weisi Lu; Bin Ouyang; Dan Liu; Zhou Songyang
Journal:  J Biol Chem       Date:  2013-12-17       Impact factor: 5.157

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