Literature DB >> 23820510

The task force that rescues stalled ribosomes in bacteria.

Emmanuel Giudice1, Reynald Gillet.   

Abstract

In bacteria, the main quality control mechanism for rescuing ribosomes that have arrested during translation is trans-translation, performed by transfer-mRNA (tmRNA) associated with small protein B (SmpB). Intriguingly, this very elegant mechanism is not always necessary to maintain cell viability, suggesting the existence of alternatives. Other rescue systems have recently been discovered, revealing a far more complicated story than expected. These include the alternative ribosome rescue factors ArfA and ArfB, the elongation factors EF4 and EF-P, the peptidyl-tRNA hydrolase Pth, and several protein synthesis factors. These discoveries make it possible to describe a large network of factors dedicated to ribosome rescue, thus ensuring cell survival during stresses that induce ribosome stalling.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  quality control; ribosome; stalling; tmRNA; trans-translation; translation

Mesh:

Substances:

Year:  2013        PMID: 23820510     DOI: 10.1016/j.tibs.2013.06.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  19 in total

1.  Molecular determinants of release factor 2 for ArfA-mediated ribosome rescue.

Authors:  Daisuke Kurita; Tatsuhiko Abo; Hyouta Himeno
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

2.  Mechanistic insights into the alternative translation termination by ArfA and RF2.

Authors:  Chengying Ma; Daisuke Kurita; Ningning Li; Yan Chen; Hyouta Himeno; Ning Gao
Journal:  Nature       Date:  2016-12-01       Impact factor: 49.962

3.  Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.

Authors:  Fuxing Zeng; Yanbo Chen; Jonathan Remis; Mrinal Shekhar; James C Phillips; Emad Tajkhorshid; Hong Jin
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

4.  Translation initiation rate determines the impact of ribosome stalling on bacterial protein synthesis.

Authors:  Steven J Hersch; Sara Elgamal; Assaf Katz; Michael Ibba; William Wiley Navarre
Journal:  J Biol Chem       Date:  2014-08-22       Impact factor: 5.157

5.  Small stable RNA maturation and turnover in Bacillus subtilis.

Authors:  Laetitia Gilet; Jeanne M DiChiara; Sabine Figaro; David H Bechhofer; Ciarán Condon
Journal:  Mol Microbiol       Date:  2014-12-19       Impact factor: 3.501

6.  Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria.

Authors:  Rembrandt J F Haft; David H Keating; Tyler Schwaegler; Michael S Schwalbach; Jeffrey Vinokur; Mary Tremaine; Jason M Peters; Matthew V Kotlajich; Edward L Pohlmann; Irene M Ong; Jeffrey A Grass; Patricia J Kiley; Robert Landick
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

Review 7.  Marching to the beat of the ring: polypeptide translocation by AAA+ proteases.

Authors:  Kristofor Nyquist; Andreas Martin
Journal:  Trends Biochem Sci       Date:  2013-12-06       Impact factor: 13.807

Review 8.  The bacterial translation stress response.

Authors:  Agata L Starosta; Jürgen Lassak; Kirsten Jung; Daniel N Wilson
Journal:  FEMS Microbiol Rev       Date:  2014-09-26       Impact factor: 16.408

Review 9.  Battle against RNA oxidation: molecular mechanisms for reducing oxidized RNA to protect cells.

Authors:  Zhongwei Li; Sulochan Malla; Brian Shin; James M Li
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-16       Impact factor: 9.957

10.  Translational termination without a stop codon.

Authors:  Nathan R James; Alan Brown; Yuliya Gordiyenko; V Ramakrishnan
Journal:  Science       Date:  2016-12-01       Impact factor: 47.728

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