Literature DB >> 24375979

Battle against RNA oxidation: molecular mechanisms for reducing oxidized RNA to protect cells.

Zhongwei Li1, Sulochan Malla, Brian Shin, James M Li.   

Abstract

Oxidation is probably the most common type of damage that occurs in cellular RNA. Oxidized RNA may be dysfunctional and is implicated in the pathogenesis of age-related human diseases. Cellular mechanisms controlling oxidized RNA have begun to be revealed. Currently, a number of ribonucleases and RNA-binding proteins have been shown to reduce oxidized RNA and to protect cells under oxidative stress. Although information about how these factors work is still very limited, we suggest several mechanisms that can be used to minimize oxidized RNA in various organisms.
© 2013 John Wiley & Sons, Ltd.

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Year:  2013        PMID: 24375979      PMCID: PMC3991771          DOI: 10.1002/wrna.1214

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  94 in total

1.  Quantification of 8-oxo-guanine and guanine as the nucleobase, nucleoside and deoxynucleoside forms in human urine by high-performance liquid chromatography-electrospray tandem mass spectrometry.

Authors:  Allan Weimann; Dorthe Belling; Henrik E Poulsen
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

2.  Specific binding of 8-oxoguanine-containing RNA to polynucleotide phosphorylase protein.

Authors:  H Hayakawa; M Kuwano; M Sekiguchi
Journal:  Biochemistry       Date:  2001-08-21       Impact factor: 3.162

3.  Quantification of oxidized levels of specific RNA species using an aldehyde reactive probe.

Authors:  Mikiei Tanaka; Song Han; Pascal A Küpfer; Christian J Leumann; William E Sonntag
Journal:  Anal Biochem       Date:  2011-05-30       Impact factor: 3.365

4.  Bacterial cell death induced by human pro-apoptotic Bax is blocked by an RNase E mutant that functions in an anti-oxidant pathway.

Authors:  R Nanbu-Wakao; S Asoh; K Nishimaki; R Tanaka; S Ohta
Journal:  Genes Cells       Date:  2000-03       Impact factor: 1.891

Review 5.  RNA oxidation: a contributing factor or an epiphenomenon in the process of neurodegeneration.

Authors:  Qiongman Kong; Xiu Shan; Yueming Chang; Hirofumi Tashiro; Chien-Liang Glenn Lin
Journal:  Free Radic Res       Date:  2008-09

6.  Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.

Authors:  Sujatha Kadaba; Anna Krueger; Tamyra Trice; Annette M Krecic; Alan G Hinnebusch; James Anderson
Journal:  Genes Dev       Date:  2004-05-14       Impact factor: 11.361

7.  Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.

Authors:  Irina Chernyakov; Joseph M Whipple; Lakmal Kotelawala; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Genes Dev       Date:  2008-04-28       Impact factor: 11.361

8.  Functional cooperation of MutT, MutM and MutY proteins in preventing mutations caused by spontaneous oxidation of guanine nucleotide in Escherichia coli.

Authors:  T Tajiri; H Maki; M Sekiguchi
Journal:  Mutat Res       Date:  1995-05       Impact factor: 2.433

9.  Urinary markers of nucleic acid oxidation and long-term mortality of newly diagnosed type 2 diabetic patients.

Authors:  Kasper Broedbaek; Volkert Siersma; Trine Henriksen; Allan Weimann; Morten Petersen; Jon T Andersen; Espen Jimenez-Solem; Elisabeth S Stovgaard; Lars J Hansen; Jan Erik Henriksen; Steen J Bonnema; Niels de Fine Olivarius; Henrik E Poulsen
Journal:  Diabetes Care       Date:  2011-10-12       Impact factor: 19.112

10.  Association between urinary markers of nucleic acid oxidation and mortality in type 2 diabetes: a population-based cohort study.

Authors:  Kasper Broedbaek; Volkert Siersma; Trine Henriksen; Allan Weimann; Morten Petersen; Jon T Andersen; Espen Jimenez-Solem; Lars J Hansen; Jan Erik Henriksen; Steen J Bonnema; Niels de Fine Olivarius; Henrik E Poulsen
Journal:  Diabetes Care       Date:  2012-11-12       Impact factor: 19.112

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  12 in total

Review 1.  8-Oxoguanine: from oxidative damage to epigenetic and epitranscriptional modification.

Authors:  Ja Young Hahm; Jongyeun Park; Eun-Sook Jang; Sung Wook Chi
Journal:  Exp Mol Med       Date:  2022-10-21       Impact factor: 12.153

2.  RNA virus population diversity, an optimum for maximal fitness and virulence.

Authors:  Victoria K Korboukh; Cheri A Lee; Ashley Acevedo; Marco Vignuzzi; Yinghong Xiao; Jamie J Arnold; Stephen Hemperly; Jason D Graci; Avery August; Raul Andino; Craig E Cameron
Journal:  J Biol Chem       Date:  2014-09-11       Impact factor: 5.157

Review 3.  Role of RNA Oxidation in Neurodegenerative Diseases.

Authors:  Ziqian Liu; Xiatian Chen; Zhe Li; Wei Ye; Hongyan Ding; Peifeng Li; Lynn Htet Htet Aung
Journal:  Int J Mol Sci       Date:  2020-07-16       Impact factor: 5.923

4.  Clinical relevance of guanine-derived urinary biomarkers of oxidative stress, determined by LC-MS/MS.

Authors:  Ying-Ming Shih; Marcus S Cooke; Chih-Hong Pan; Mu-Rong Chao; Chiung-Wen Hu
Journal:  Redox Biol       Date:  2018-11-26       Impact factor: 11.799

5.  Obesity-Related Microenvironment Promotes Emergence of Virulent Influenza Virus Strains.

Authors:  Rebekah Honce; Erik A Karlsson; Nicholas Wohlgemuth; Leonardo D Estrada; Victoria A Meliopoulos; Jiangwei Yao; Stacey Schultz-Cherry
Journal:  mBio       Date:  2020-03-03       Impact factor: 7.867

6.  Transcriptomic Evidence of Molecular Mechanisms Underlying the Response of Lactobacillus Plantarum WCFS1 to Hydroxytyrosol.

Authors:  Inés Reverón; Laura Plaza-Vinuesa; Laura Santamaría; Juan Carlos Oliveros; Blanca de Las Rivas; Rosario Muñoz; Félix López de Felipe
Journal:  Antioxidants (Basel)       Date:  2020-05-20

Review 7.  The Impact of Oxidative Stress on Ribosomes: From Injury to Regulation.

Authors:  Natalia Shcherbik; Dimitri G Pestov
Journal:  Cells       Date:  2019-11-02       Impact factor: 6.600

Review 8.  Bacterial Response to Oxidative Stress and RNA Oxidation.

Authors:  André F Seixas; Ana P Quendera; João P Sousa; Alda F Q Silva; Cecília M Arraiano; José M Andrade
Journal:  Front Genet       Date:  2022-01-10       Impact factor: 4.599

9.  Processing of RNA Containing 8-Oxo-7,8-Dihydroguanosine (8-oxoG) by the Exoribonuclease Xrn-1.

Authors:  Cheyenne N Phillips; Shawn Schowe; Conner J Langeberg; Namoos Siddique; Erich G Chapman; Marino J E Resendiz
Journal:  Front Mol Biosci       Date:  2021-11-15

10.  Translesion synthesis by AMV, HIV, and MMLVreverse transcriptases using RNA templates containing inosine, guanosine, and their 8-oxo-7,8-dihydropurine derivatives.

Authors:  Madeline M Glennon; Austin Skinner; Mara Krutsinger; Marino J E Resendiz
Journal:  PLoS One       Date:  2020-08-28       Impact factor: 3.240

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