| Literature DB >> 23819824 |
Hong Xiao1, Xiaoling Lin, Lidong Gao, Cunrui Huang, Huaiyu Tian, Na Li, Jianxin Qin, Peijuan Zhu, Biyun Chen, Xixing Zhang, Jian Zhao.
Abstract
BACKGROUND: Hemorrhagic fever with renal syndrome (HFRS) is an important public health problem in mainland China. HFRS is particularly endemic in Changsha, the capital city of Hunan Province, with one of the highest incidences in China. The occurrence of HFRS is influenced by environmental factors. However, few studies have examined the relationship between environmental variation (such as land use changes and climate variations), rodents and HFRS occurrence. The purpose of this study is to predict the distribution of HFRS and identify the risk factors and relationship between HFRS occurrence and rodent hosts, combining ecological modeling with the Markov chain Monte Carlo approach.Entities:
Mesh:
Year: 2013 PMID: 23819824 PMCID: PMC3708768 DOI: 10.1186/1471-2334-13-305
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Figure 1Location of study area, showing city of Changsha in mainland China.
Figure 2Monthly HFRS incidence in Changsha, from 2005 through 2009.
Ecogeographical variables for modeling
| Temperature | WorldClim ( | Continuous |
| Temperature seasonality | WorldClim ( | Continuous |
| Precipitation | WorldClim ( | Continuous |
| Precipitation seasonality | WorldClim ( | Continuous |
| Elevation | WorldClim ( | Continuous |
| Slope | Derived from elevation | Continuous |
| Aspect | Derived from elevation | Categorical |
| Land use | The Second National Land Survey Data | Categorical |
| CTI | United States Geological Survey ( | Continuous |
| Human Footprint index | International Earth Science Information Center( | Continuous |
| Population | Changsha Statistical Yearbook | Continuous |
| MHT | World Wildlife Fund( | Categorical |
| NDVI | National Aeronautics and Space Administration ( | Continuous |
Test methods of ecological niche models
| Overall Accuracy | (a + d) / (a + b + c + d) |
| False Negatives | c / (a + c) |
| False Positives | b / (b + d) |
a = areas of actual presence predicted present; b = areas of actual absence predicted present; c = areas of actual presence predicted absent; d = areas of actual absence predicted absent.
Figure 3Composition of rodent species and HFRS cases in Changsha. (a) Proportion of each rodent species, from monitoring data; (b) proportion of HFRS cases in different risk areas.
Summary of model predictions and tests for Changsha
| NS | |||||
| North predicts south | 162 | 165 | 131 | 0.3544 | <0.01 |
| South predicts north | 165 | 162 | 151 | 0.5303 | <0.01 |
| WE | |||||
| West predicts east | 246 | 81 | 42 | 0.1806 | <0.01 |
| East predicts west | 81 | 246 | 6 | 0.0582 | <0.01 |
| DIAG | |||||
| On predicts off | 157 | 170 | 121 | 0.3001 | <0.01 |
| Off predicts on | 170 | 157 | 137 | 0.4576 | <0.01 |
| Time | |||||
| 05-08 predicts 09 | 262 | 65 | 62 | 0.3792 | <0.01 |
Figure 4Examples of spatially stratified tests of ENMs predictions of HFRS distributions in Changsha. (a) Occurrences in western quadrants were used to predict distributions of cases in eastern quadrants; (b) occurrences in eastern quadrants were used to predict distributions of cases in western quadrants; (c) occurrences in northern quadrants were used to predict distributions of cases in southern quadrants; (d) occurrences in southern quadrants were used to predict distributions of cases in northern quadrants; (e) occurrences in off-diagonal quadrants were used to predict distributions of cases in on-diagonal quadrants; (f) occurrences in on-diagonal quadrants were used to predict distributions of cases in off-diagonal quadrants; and (g) occurrences from 2005 through 2008 were used to predict distributions of cases in 2009.
Summary of statistical analysis of jackknife procedure
| Aspect | 0.827 | .017 | NDVI(Jan) | 0.806 | .018 |
| CTI* | 0.860 | .016 | NDVI(Feb) | 0.822 | .021 |
| elevation | 0.817 | .018 | NDVI(Mar) | 0.830 | .021 |
| Ecology | 0.821 | .016 | NDVI(Apr) | 0.827 | .016 |
| Land use | 0.813 | .016 | NDVI(May) | 0.839 | .017 |
| MHT | 0.841 | .017 | NDVI(Jun) | 0.814 | .017 |
| Population density* | 0.855 | .016 | NDVI(Jul) | 0.830 | .020 |
| Precipitation | 0.821 | .017 | NDVI(Aug) | 0.838 | .019 |
| Precipitation seasonality | 0.831 | .017 | NDVI(Sep) | 0.824 | .017 |
| Human footprint index | 0.823 | .017 | NDVI(Oct) | 0.819 | .019 |
| Slope | 0.833 | .018 | NDVI(Nov) | 0.788 | .018 |
| Temperature | 0.831 | .017 | NDVI(Dec) | 0.832 | .017 |
| Temperature seasonality | 0.810 | .017 |
AUC value of ENMs when variables were excluded.
* Indicates exclusion of this variable from the model to improve its accuracy.
Figure 5Predicted risk map for HFRS in 2009, overlaid with HFRS case localities in 2009.
Figure 6Exploratory visualization of HFRS niche in two-dimensional environmental space. Gray indicates available environmental conditions, and black the modeled ecological niche of hantavirus: (a) annual precipitation and annual temperature; (b) precipitation seasonality and temperature seasonality; (c) compound topographic index and elevation; (d) land use. Solid line depicts variation in mean monthly NDVI values of (e) predicted absent, and (f) predicted present.
Figure 7Influence of land use type on HFRS occurrence.
Figure 8Association between HFRS cases and relative population density of rodents predicted by MCMC. (a) Kernel density estimates of posterior distributions; (b) pairwise scatterplots of columns of the chain; (c) histogram of error standard deviation; (d) predictive envelopes of the model.