| Literature DB >> 16707066 |
Anna Papa1, Bojana Bojovic, Antonis Antoniadis.
Abstract
Hantaviruses are endemic in the Balkan Peninsula. An outbreak of hemorrhagic fever with renal syndrome occurred in 2002 in Serbia and Montenegro. The epidemiologic characteristics and genetic relatedness of Dobrava/Belgrade virus strains responsible for most cases are described.Entities:
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Year: 2006 PMID: 16707066 PMCID: PMC3373030 DOI: 10.3201/eid1206.051564
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
ELISA and PCR results from 31 serum samples tested in this study*
| Patient | Sex | Year of birth | ELISA (indexes) | PCR | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Collection date (day of illness) | IgM HTNV | IgG HTNV | IgM PUUV | IgG PUUV | MS | MM-G1 | PPT | |||
| GD | M | 1979 | Oct 17 | 2.5 | 1.8 | Cutoff | Cutoff | Neg | ||
| CS | M | 1972 | Oct 17 | 2.9 | Neg | Cutoff | Neg | |||
| PM | M | 1958 | Oct 9 | Neg | 1.8 | Neg | 1.4 | |||
| DZ | F | 1951 | Sep 20 | 3.2 | 2.0 | Cutoff | Neg | Neg | ||
| RD | M | 1968 | Aug 19 | 3.3 | 2.3 | Cutoff | Cutoff | Neg | ||
| DR | M | 1958 | Aug 9 | Cutoff | Neg | Cutoff | Cutoff | |||
| SS | F | 1973 | Aug 1 | 2.9 | 2.1 | Neg | Neg | |||
| DO | M | 1956 | Jul 26 | 1.8 | 2.5 | 1.5 | 1.5 | Neg | Neg | |
| RM | M | UNK | Jul 12 | 2.65 | 2.13 | Cutoff | Cutoff | |||
| VM | M | 1962 | Jun 14 | 2.7 | Cutoff | 1.61 | Cutoff | Neg | Neg | |
| MM | M | 1936 | Jun 10 | 2.7 | 2.4 | Neg | Neg | |||
| GM | M | 1937 | May 13 | 3.2 | 2.8 | Cutoff | Cutoff | Neg | ||
| TV | F | 1964 | Apr 23 (day 11) | 1.6 | 3.3 | Neg | 1.7 | Neg | ||
| Apr 24 (day 12) | 1.7 | 3.5 | Neg | 2.0 | DOBV | Neg | ||||
| May 8 (day 26) | Neg | 4.7 | Neg | 1.9 | ||||||
| IR | F | 1981 | May 17(day 8) | 6.9 | 2.0 | 1.6 | Cutoff | Neg | Neg | |
| May 24 (day 15) | 6.6 | 2.9 | 1.5 | Cutoff | ||||||
| CJ | M | 1957 | May 24 (day 11) | 5.0 | 2.5 | 1.5 | Neg | Neg | Neg | |
| May 27 (day 14) | 4.2 | 2.7 | 1.8 | Neg | ||||||
| Oct 23 (day 5) | Neg | 4.2 | Neg | Neg | ||||||
| TD | M | 1958 | Jun 11 (day 12) | 4.0 | 1.7 | 1.9 | 2.2 | Neg | Neg | |
| Jun 13 (day 14) | 5.0 | 2.5 | 1.8 | 2.2 | ||||||
| Jun 28 (day 29) | 4.4 | 3.4 | 2.0 | 2.2 | ||||||
| GA | M | 2002 | Jun 19 | Neg | 1.8 | Neg | Cutoff | Neg | Neg | |
| SM | M | 1961 | Jul 3 (day 7) | 3.1 | 1.1 | Neg | Neg | Neg | Neg | |
| Jul 7 (day 11) | 4.6 | 2.4 | Neg | Neg | ||||||
| PV | F | 1972 | Jun 20 (day 5) | 4.3 | 2.0 | Neg | Neg | DOBV | Neg | |
| MD | ? | 1981 | Sep 18 (day 8) | 4.3 | 1.2 | Neg | Neg | DOBV | DOBV | |
| Sep 30 (day 20) | 4.1 | 5.0 | Neg | Neg | Neg | |||||
*ELISA, enzyme-linked immunosorbent assay; PCR, polymerase chain reaction; HTNV, Hantaan virus; PUUV, Puumala virus; DOBV, Dobrava/Belgrade virus; MS, primers for partial N coding regions of hantaviruses associated with rodents of the Murinae subfamily; MM-G1, primers for partial G1 coding regions of hantaviruses associated with rodehttp://dx.doi.org/10.3201/eidnts of the Murinae subfamily; PPT, primers for partial N coding regions of hantaviruses associated with rodents of the Arvicolinae subfamily; Unk, unknown; neg, negative; DOBV, a positive PCR band yielding Dobrava/Belgrade virus nucleotide sequences.
Figure 1Phylogenetic tree based on partial S segment fragment showing the clustering of the sequence obtained from this study and respective representative hantavirus strains from GenBank database. The numbers indicate percentage bootstrap replicates (of 100); values <60% are not shown. Horizontal distances are proportional to the nucleotide differences. The scale bar indicates 10% nucleotide sequence divergence. Vertical distances are for clarity only. BAYV, Bayou virus; BCCV, Black Creek Canal virus; ELMCV, El Moro Canyon virus; HTNV, Hantaan virus; KBRV, Khabarovsk virus; LNV, Laguna Negra; MONV, Monongahela virus; NYV, New York virus; PHV, Prospect Hill virus; PUUV, Puumala virus; RIOSV, Rio Segundo virus; SEOV, Seoul virus; SNV, Sin Nombre virus; TOPV, Topografov virus; TULV, Tula virus; VLDV, Vladivostok virus. Accession numbers of Greek DOBV strains are AF060014–AF060024 for sequences from human cases and AJ410615 and AJ410619 from Apodemus flavicollis (Afl) sequences. Sequences in this study are indicated in boldface.
Figure 2Phylogenetic tree based on partial M segment fragment showing the clustering of the sequence obtained from this study and respective representative hantavirus strains from GenBank database. The numbers indicate percentage bootstrap replicates (of 100); values <60% are not shown. Horizontal distances are proportional to the nucleotide differences. The scale bar indicates 10% nucleotide sequence divergence. Vertical distances are for clarity only. Sequences in this study are indicated in boldface. BAYV, Bayou virus; BCCV, Black Creek Canal virus; ELMCV, El Moro Canyon virus; HTNV, Hantaan virus; KBRV, Khabarovsk virus; LNV, Laguna Negra; MONV, Monongahela virus; NYV, New York virus; PHV, Prospect Hill virus; PUUV, Puumala virus; RIOSV, Rio Segundo virus; SEOV, Seoul virus; SNV, Sin Nombre virus; TOPV, Topografov virus; TULV, Tula virus; VLDV, Vladivostok virus.
Genetic distances (%) in partial S segment fragment (364–963 nucleotides) of hantaviruses associated with Murinae rodents among Yugoslavian DOBV strains and representative DOBV strains related with different Apodemus spp. rodents*
| Strain | Yugoslavian DOBV strains | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 7937/02 (PV) | 5157/02 (TV) | 9744/02 (MD) | GR-EA NW Greece | GR-PA NC Greece | GR-TD NE Greece | AP-Af9 NE Greece | DOBV-1 Slovenia | 862 East Slovakia | Saarema Estonia | Krasnodar Russia | |
| PV | 0.3 | 2.6 | 4.9 | 4.9 | 3.0 | 3.2 | 4.0 | 17.5 | 15.6 | 9.5 | |
| TV | 2.2 | 4.5 | 4.5 | 2.8 | 3.0 | 3.6 | 17.0 | 15.0 | 9.0 | ||
| MD | 4.5 | 4.5 | 2.8 | 3.4 | 3.6 | 16.1 | 15.3 | 9.4 | |||
*DOBV, Dobrava/Belgrade virus; –, 0.0.