Literature DB >> 23818497

Principles and concepts of DNA replication in bacteria, archaea, and eukarya.

Michael O'Donnell1, Lance Langston, Bruce Stillman.   

Abstract

The accurate copying of genetic information in the double helix of DNA is essential for inheritance of traits that define the phenotype of cells and the organism. The core machineries that copy DNA are conserved in all three domains of life: bacteria, archaea, and eukaryotes. This article outlines the general nature of the DNA replication machinery, but also points out important and key differences. The most complex organisms, eukaryotes, have to coordinate the initiation of DNA replication from many origins in each genome and impose regulation that maintains genomic integrity, not only for the sake of each cell, but for the organism as a whole. In addition, DNA replication in eukaryotes needs to be coordinated with inheritance of chromatin, developmental patterning of tissues, and cell division to ensure that the genome replicates once per cell division cycle.

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Year:  2013        PMID: 23818497      PMCID: PMC3685895          DOI: 10.1101/cshperspect.a010108

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  60 in total

1.  Replication timing: the early bird catches the worm.

Authors:  Max E Douglas; John F X Diffley
Journal:  Curr Biol       Date:  2012-02-07       Impact factor: 10.834

2.  Mcm10 associates with the loaded DNA helicase at replication origins and defines a novel step in its activation.

Authors:  Frederick van Deursen; Sugopa Sengupta; Giacomo De Piccoli; Alberto Sanchez-Diaz; Karim Labib
Journal:  EMBO J       Date:  2012-03-20       Impact factor: 11.598

Review 3.  DNA replication and repair bypass machines.

Authors:  Ulrich Hübscher; Giovanni Maga
Journal:  Curr Opin Chem Biol       Date:  2011-09-01       Impact factor: 8.822

Review 4.  Okazaki fragment metabolism.

Authors:  Lata Balakrishnan; Robert A Bambara
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-02-01       Impact factor: 10.005

5.  Rate, origin, and bidirectionality of Caulobacter chromosome replication as determined by pulsed-field gel electrophoresis.

Authors:  A Dingwall; L Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

6.  Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance.

Authors:  Supriya G Prasanth; Kannanganattu V Prasanth; Khalid Siddiqui; David L Spector; Bruce Stillman
Journal:  EMBO J       Date:  2004-06-24       Impact factor: 11.598

7.  Meier-Gorlin syndrome mutations disrupt an Orc1 CDK inhibitory domain and cause centrosome reduplication.

Authors:  Manzar Hossain; Bruce Stillman
Journal:  Genes Dev       Date:  2012-08-01       Impact factor: 11.361

8.  Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy.

Authors:  Jingchuan Sun; Hironori Kawakami; Juergen Zech; Christian Speck; Bruce Stillman; Huilin Li
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

Review 9.  Quality control in the initiation of eukaryotic DNA replication.

Authors:  John F X Diffley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-12-27       Impact factor: 6.237

10.  Recruitment of the human Cdt1 replication licensing protein by the loop domain of Hec1 is required for stable kinetochore-microtubule attachment.

Authors:  Dileep Varma; Srikripa Chandrasekaran; Lynsie J R Sundin; Karen T Reidy; Xiaohu Wan; Dawn A D Chasse; Kathleen R Nevis; Jennifer G DeLuca; E D Salmon; Jeanette Gowen Cook
Journal:  Nat Cell Biol       Date:  2012-05-13       Impact factor: 28.824

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  150 in total

1.  Structure of the eukaryotic MCM complex at 3.8 Å.

Authors:  Ningning Li; Yuanliang Zhai; Yixiao Zhang; Wanqiu Li; Maojun Yang; Jianlin Lei; Bik-Kwoon Tye; Ning Gao
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

2.  How a Genetically Stable Extremophile Evolves: Modes of Genome Diversification in the Archaeon Sulfolobus acidocaldarius.

Authors:  Dominic Mao; Dennis W Grogan
Journal:  J Bacteriol       Date:  2017-08-08       Impact factor: 3.490

3.  Snapshots of archaeal DNA replication and repair in living cells using super-resolution imaging.

Authors:  Floriane Delpech; Yoann Collien; Pierre Mahou; Emmanuel Beaurepaire; Hannu Myllykallio; Roxane Lestini
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

4.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

Review 5.  Forging Ahead through Darkness: PCNA, Still the Principal Conductor at the Replication Fork.

Authors:  Katherine N Choe; George-Lucian Moldovan
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

Review 6.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

Review 7.  Cell-free Xenopus egg extracts for studying DNA damage response pathways.

Authors:  Steven Cupello; Christine Richardson; Shan Yan
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

8.  DNA polymerase from temperate phage Bam35 is endowed with processive polymerization and abasic sites translesion synthesis capacity.

Authors:  Mónica Berjón-Otero; Laurentino Villar; Miguel de Vega; Margarita Salas; Modesto Redrejo-Rodríguez
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

9.  The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex.

Authors:  Yasunori Noguchi; Yukari Sakiyama; Hironori Kawakami; Tsutomu Katayama
Journal:  J Biol Chem       Date:  2015-06-30       Impact factor: 5.157

10.  Completion of DNA replication in Escherichia coli.

Authors:  Brian M Wendel; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

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