Literature DB >> 23807390

Partial alignment and measurement of residual dipolar couplings of proteins under high hydrostatic pressure.

Yinan Fu1, A Joshua Wand.   

Abstract

High-pressure NMR spectroscopy has emerged as a complementary approach for investigating various structural and thermodynamic properties of macromolecules. Noticeably absent from the array of experimental restraints that have been employed to characterize protein structures at high hydrostatic pressure is the residual dipolar coupling, which requires the partial alignment of the macromolecule of interest. Here we examine five alignment media that are commonly used at ambient pressure for this purpose. We find that the spontaneous alignment of Pf1 phage, d(GpG) and a C12E5/n-hexnanol mixture in a magnetic field is preserved under high hydrostatic pressure. However, DMPC/DHPC bicelles and collagen gel are found to be unsuitable. Evidence is presented to demonstrate that pressure-induced structural changes can be identified using the residual dipolar coupling.

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Year:  2013        PMID: 23807390      PMCID: PMC3758465          DOI: 10.1007/s10858-013-9754-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  24 in total

1.  Cavities determine the pressure unfolding of proteins.

Authors:  Julien Roche; Jose A Caro; Douglas R Norberto; Philippe Barthe; Christian Roumestand; Jamie L Schlessman; Angel E Garcia; Bertrand E García-Moreno; Catherine A Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-10       Impact factor: 11.205

2.  Standard tensorial analysis of local ordering in proteins from residual dipolar couplings.

Authors:  Eva Meirovitch; Donghan Lee; Korvin F A Walter; Christian Griesinger
Journal:  J Phys Chem B       Date:  2012-05-17       Impact factor: 2.991

3.  NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.

Authors:  Ryo Kitahara; Shigeyuki Yokoyama; Kazuyuki Akasaka
Journal:  J Mol Biol       Date:  2005-03-25       Impact factor: 5.469

Review 4.  Probing conformational fluctuation of proteins by pressure perturbation.

Authors:  Kazuyuki Akasaka
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

Review 5.  NMR residual dipolar couplings as probes of biomolecular dynamics.

Authors:  Joel R Tolman; Ke Ruan
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

6.  Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.

Authors:  Oliver F Lange; Nils-Alexander Lakomek; Christophe Farès; Gunnar F Schröder; Korvin F A Walter; Stefan Becker; Jens Meiler; Helmut Grubmüller; Christian Griesinger; Bert L de Groot
Journal:  Science       Date:  2008-06-13       Impact factor: 47.728

7.  Coupled motion in proteins revealed by pressure perturbation.

Authors:  Yinan Fu; Vignesh Kasinath; Veronica R Moorman; Nathaniel V Nucci; Vincent J Hilser; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2012-04-10       Impact factor: 15.419

8.  Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values.

Authors:  M Ottiger; A Bax
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

9.  Weak alignment of biomacromolecules in collagen gels: an alternative way to yield residual dipolar couplings for NMR measurements.

Authors:  Junhe Ma; Gregory I Goldberg; Nico Tjandra
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

10.  Liquid crystalline phase of G-tetrad DNA for NMR study of detergent-solubilized proteins.

Authors:  Justin Lorieau; Lishan Yao; Ad Bax
Journal:  J Am Chem Soc       Date:  2008-05-23       Impact factor: 15.419

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  5 in total

1.  Measuring residual dipolar couplings at high hydrostatic pressure: robustness of alignment media to high pressure.

Authors:  Nathalie Sibille; Mariano Dellarole; Catherine Royer; Christian Roumestand
Journal:  J Biomol NMR       Date:  2013-12-01       Impact factor: 2.835

2.  Pressure-induced structural transition of mature HIV-1 protease from a combined NMR/MD simulation approach.

Authors:  Julien Roche; John M Louis; Ad Bax; Robert B Best
Journal:  Proteins       Date:  2015-10-16

3.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

4.  Interactions Controlling the Slow Dynamic Conformational Motions of Ubiquitin.

Authors:  Soichiro Kitazawa; Maho Yagi-Utsumi; Koichi Kato; Ryo Kitahara
Journal:  Molecules       Date:  2017-08-28       Impact factor: 4.411

Review 5.  Combining High-Pressure Perturbation with NMR Spectroscopy for a Structural and Dynamical Characterization of Protein Folding Pathways.

Authors:  Cécile Dubois; Isaline Herrada; Philippe Barthe; Christian Roumestand
Journal:  Molecules       Date:  2020-11-26       Impact factor: 4.411

  5 in total

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