Literature DB >> 18998689

Weak alignment of biomacromolecules in collagen gels: an alternative way to yield residual dipolar couplings for NMR measurements.

Junhe Ma1, Gregory I Goldberg, Nico Tjandra.   

Abstract

Collagen, consisting of glycine, proline, and hydroxyproline, is a fibrous protein that can form a rope-like left-hand triple helix structure. It is demonstrated here that the collagen gels prepared from polymerization in the magnetic field can provide weak alignment for protein. The alignment order induced by collagen gels is quite small when compared to other alignment media, but the magnitude of the dipolar couplings can be easily scaled up by increasing the initial concentration of collagen. The collagen gels showed good pH and detergent tolerance. These advantages of collagen gels make it a promising candidate for the alignment of large biomolecules or membrane protein-detergent complexes in the magnetic field.

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Year:  2008        PMID: 18998689      PMCID: PMC3556744          DOI: 10.1021/ja807064k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Characterization of surfactant liquid crystal phases suitable for molecular alignment and measurement of dipolar couplings.

Authors:  L G Barrientos; C Dolan; A M Gronenborn
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

Review 2.  Dipolar couplings in macromolecular structure determination.

Authors:  A Bax; G Kontaxis; N Tjandra
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles.

Authors:  J J Chou; S Gaemers; B Howder; J M Louis; A Bax
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

4.  Model-free analysis of protein backbone motion from residual dipolar couplings.

Authors:  Wolfgang Peti; Jens Meiler; Rafael Brüschweiler; Christian Griesinger
Journal:  J Am Chem Soc       Date:  2002-05-22       Impact factor: 15.419

Review 5.  Collagens and collagen-related diseases.

Authors:  J Myllyharju; K I Kivirikko
Journal:  Ann Med       Date:  2001-02       Impact factor: 4.709

6.  Polymerization of type I and III collagens is dependent on fibronectin and enhanced by integrins alpha 11beta 1 and alpha 2beta 1.

Authors:  Teet Velling; Juha Risteli; Krister Wennerberg; Deane F Mosher; Staffan Johansson
Journal:  J Biol Chem       Date:  2002-07-26       Impact factor: 5.157

7.  Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.

Authors:  Oliver F Lange; Nils-Alexander Lakomek; Christophe Farès; Gunnar F Schröder; Korvin F A Walter; Stefan Becker; Jens Meiler; Helmut Grubmüller; Christian Griesinger; Bert L de Groot
Journal:  Science       Date:  2008-06-13       Impact factor: 47.728

8.  Assembly of collagen fibrils de novo by cleavage of the type I pC-collagen with procollagen C-proteinase. Assay of critical concentration demonstrates that collagen self-assembly is a classical example of an entropy-driven process.

Authors:  K E Kadler; Y Hojima; D J Prockop
Journal:  J Biol Chem       Date:  1987-11-15       Impact factor: 5.157

9.  Interstitial collagenase is a Brownian ratchet driven by proteolysis of collagen.

Authors:  Saveez Saffarian; Ivan E Collier; Barry L Marmer; Elliot L Elson; Gregory Goldberg
Journal:  Science       Date:  2004-10-01       Impact factor: 47.728

10.  De novo determination of bond orientations and order parameters from residual dipolar couplings with high accuracy.

Authors:  Kathryn B Briggman; Joel R Tolman
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

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  4 in total

Review 1.  The use of residual dipolar coupling in studying proteins by NMR.

Authors:  Kang Chen; Nico Tjandra
Journal:  Top Curr Chem       Date:  2012

2.  Partial alignment and measurement of residual dipolar couplings of proteins under high hydrostatic pressure.

Authors:  Yinan Fu; A Joshua Wand
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

3.  DNA nanotubes for NMR structure determination of membrane proteins.

Authors:  Gaëtan Bellot; Mark A McClintock; James J Chou; William M Shih
Journal:  Nat Protoc       Date:  2013-03-21       Impact factor: 13.491

Review 4.  Residual Dipolar Couplings in Structure Determination of Natural Products.

Authors:  Gao-Wei Li; Han Liu; Feng Qiu; Xiao-Juan Wang; Xin-Xiang Lei
Journal:  Nat Prod Bioprospect       Date:  2018-06-25
  4 in total

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