Literature DB >> 23802688

Pressure-controlled motion of single polymers through solid-state nanopores.

Bo Lu1, David P Hoogerheide, Qing Zhao, Hengbin Zhang, Zhipeng Tang, Dapeng Yu, Jene A Golovchenko.   

Abstract

Voltage-biased solid-state nanopores are well established in their ability to detect and characterize single polymers, such as DNA, in electrolytes. The addition of a pressure gradient across the nanopore yields a second molecular driving force that provides new freedom for studying molecules in nanopores. In this work, we show that opposing pressure and voltage bias enables nanopores to detect and resolve very short DNA molecules, as well as to detect near-neutral polymers.

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Year:  2013        PMID: 23802688      PMCID: PMC3864131          DOI: 10.1021/nl402052v

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  21 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  Nanopore DNA sequencing with MspA.

Authors:  Ian M Derrington; Tom Z Butler; Marcus D Collins; Elizabeth Manrao; Mikhail Pavlenok; Michael Niederweis; Jens H Gundlach
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

3.  Direct force measurements on double-stranded RNA in solid-state nanopores.

Authors:  Michiel van den Hout; Igor D Vilfan; Susanne Hage; Nynke H Dekker
Journal:  Nano Lett       Date:  2010-02-10       Impact factor: 11.189

4.  Origins and consequences of velocity fluctuations during DNA passage through a nanopore.

Authors:  Bo Lu; Fernando Albertorio; David P Hoogerheide; Jene A Golovchenko
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

5.  Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase.

Authors:  Elizabeth A Manrao; Ian M Derrington; Andrew H Laszlo; Kyle W Langford; Matthew K Hopper; Nathaniel Gillgren; Mikhail Pavlenok; Michael Niederweis; Jens H Gundlach
Journal:  Nat Biotechnol       Date:  2012-03-25       Impact factor: 54.908

6.  Theory for polymer analysis using nanopore-based single-molecule mass spectrometry.

Authors:  Joseph E Reiner; John J Kasianowicz; Brian J Nablo; Joseph W F Robertson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

7.  Slowing down DNA translocation through a nanopore in lithium chloride.

Authors:  Stefan W Kowalczyk; David B Wells; Aleksei Aksimentiev; Cees Dekker
Journal:  Nano Lett       Date:  2012-01-27       Impact factor: 11.189

8.  Probing surface charge fluctuations with solid-state nanopores.

Authors:  David P Hoogerheide; Slaven Garaj; Jene A Golovchenko
Journal:  Phys Rev Lett       Date:  2009-06-26       Impact factor: 9.161

9.  Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision.

Authors:  Gerald M Cherf; Kate R Lieberman; Hytham Rashid; Christopher E Lam; Kevin Karplus; Mark Akeson
Journal:  Nat Biotechnol       Date:  2012-02-14       Impact factor: 54.908

10.  Replication of individual DNA molecules under electronic control using a protein nanopore.

Authors:  Felix Olasagasti; Kate R Lieberman; Seico Benner; Gerald M Cherf; Joseph M Dahl; David W Deamer; Mark Akeson
Journal:  Nat Nanotechnol       Date:  2010-09-26       Impact factor: 39.213

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  19 in total

Review 1.  Decoding DNA, RNA and peptides with quantum tunnelling.

Authors:  Massimiliano Di Ventra; Masateru Taniguchi
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

Review 2.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

3.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

4.  Graphene Nanopores for Protein Sequencing.

Authors:  James Wilson; Leila Sloman; Zhiren He; Aleksei Aksimentiev
Journal:  Adv Funct Mater       Date:  2016-06-09       Impact factor: 18.808

Review 5.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

6.  Dynamics of a Molecular Plug Docked onto a Solid-State Nanopore.

Authors:  Xin Shi; Qiao Li; Rui Gao; Wei Si; Shao-Chuang Liu; Aleksei Aksimentiev; Yi-Tao Long
Journal:  J Phys Chem Lett       Date:  2018-08-03       Impact factor: 6.475

7.  Uncooked spaghetti in a colander: Injection of semiflexible polymers in a nanopore.

Authors:  Thomas Auger; Loïc Auvray; Jean-Marc Di Meglio; Fabien Montel
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-17       Impact factor: 1.890

8.  Differential Enzyme Flexibility Probed Using Solid-State Nanopores.

Authors:  Rui Hu; João V Rodrigues; Pradeep Waduge; Hirohito Yamazaki; Benjamin Cressiot; Yasmin Chishti; Lee Makowski; Dapeng Yu; Eugene Shakhnovich; Qing Zhao; Meni Wanunu
Journal:  ACS Nano       Date:  2018-04-17       Impact factor: 18.027

9.  High-Fidelity Capture, Threading, and Infinite-Depth Sequencing of Single DNA Molecules with a Double-Nanopore System.

Authors:  Adnan Choudhary; Himanshu Joshi; Han-Yi Chou; Kumar Sarthak; James Wilson; Christopher Maffeo; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2020-11-11       Impact factor: 15.881

10.  Pressure-voltage trap for DNA near a solid-state nanopore.

Authors:  David P Hoogerheide; Bo Lu; Jene A Golovchenko
Journal:  ACS Nano       Date:  2014-06-20       Impact factor: 15.881

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