Literature DB >> 23801531

Enhancers.

Ken W Y Cho1.   

Abstract

Transcription of eukaryotic genes is an exceedingly sophisticated and complicated process, orchestrated by layers of control mechanisms involving a myriad of transcription factors and DNA control sequences, with both groups subject to multiple modifications. The availability of various recent genomic approaches has provided previously unforeseen opportunities to examine the cis-regulatory landscape of the entire genome, resulting in the identification of a potentially overwhelming number of enhancers and novel enhancer functions. In this review, we focus on the activities of enhancers in metazoans and discuss how they serve to regulate gene expression during early development.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 23801531      PMCID: PMC3979590          DOI: 10.1002/wdev.53

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Dev Biol        ISSN: 1759-7684            Impact factor:   5.814


  63 in total

Review 1.  A method for generating transgenic frog embryos.

Authors:  Shoko Ishibashi; Kristen L Kroll; Enrique Amaya
Journal:  Methods Mol Biol       Date:  2008

Review 2.  Going the distance: a current view of enhancer action.

Authors:  E M Blackwood; J T Kadonaga
Journal:  Science       Date:  1998-07-03       Impact factor: 47.728

Review 3.  Enhancers: the abundance and function of regulatory sequences beyond promoters.

Authors:  Michael Bulger; Mark Groudine
Journal:  Dev Biol       Date:  2009-12-16       Impact factor: 3.582

4.  DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.

Authors:  Lingyun Song; Gregory E Crawford
Journal:  Cold Spring Harb Protoc       Date:  2010-02

5.  Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.

Authors:  Yingguang Frank Chan; Melissa E Marks; Felicity C Jones; Guadalupe Villarreal; Michael D Shapiro; Shannon D Brady; Audrey M Southwick; Devin M Absher; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Dmitri Petrov; Bjarni Jónsson; Dolph Schluter; Michael A Bell; David M Kingsley
Journal:  Science       Date:  2009-12-10       Impact factor: 47.728

6.  Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Authors:  Nathaniel D Heintzman; Gary C Hon; R David Hawkins; Pouya Kheradpour; Alexander Stark; Lindsey F Harp; Zhen Ye; Leonard K Lee; Rhona K Stuart; Christina W Ching; Keith A Ching; Jessica E Antosiewicz-Bourget; Hui Liu; Xinmin Zhang; Roland D Green; Victor V Lobanenkov; Ron Stewart; James A Thomson; Gregory E Crawford; Manolis Kellis; Bing Ren
Journal:  Nature       Date:  2009-03-18       Impact factor: 49.962

7.  An oestrogen-receptor-alpha-bound human chromatin interactome.

Authors:  Melissa J Fullwood; Mei Hui Liu; You Fu Pan; Jun Liu; Han Xu; Yusoff Bin Mohamed; Yuriy L Orlov; Stoyan Velkov; Andrea Ho; Poh Huay Mei; Elaine G Y Chew; Phillips Yao Hui Huang; Willem-Jan Welboren; Yuyuan Han; Hong Sain Ooi; Pramila N Ariyaratne; Vinsensius B Vega; Yanquan Luo; Peck Yean Tan; Pei Ye Choy; K D Senali Abayratna Wansa; Bing Zhao; Kar Sian Lim; Shi Chi Leow; Jit Sin Yow; Roy Joseph; Haixia Li; Kartiki V Desai; Jane S Thomsen; Yew Kok Lee; R Krishna Murthy Karuturi; Thoreau Herve; Guillaume Bourque; Hendrik G Stunnenberg; Xiaoan Ruan; Valere Cacheux-Rataboul; Wing-Kin Sung; Edison T Liu; Chia-Lin Wei; Edwin Cheung; Yijun Ruan
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

Review 8.  A census of human transcription factors: function, expression and evolution.

Authors:  Juan M Vaquerizas; Sarah K Kummerfeld; Sarah A Teichmann; Nicholas M Luscombe
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

9.  A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings.

Authors:  Tomoko Sagai; Takanori Amano; Masaru Tamura; Yoichi Mizushina; Kenta Sumiyama; Toshihiko Shiroishi
Journal:  Development       Date:  2009-04-15       Impact factor: 6.868

Review 10.  Genomic views of distant-acting enhancers.

Authors:  Axel Visel; Edward M Rubin; Len A Pennacchio
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

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  3 in total

Review 1.  Identifying transcriptional cis-regulatory modules in animal genomes.

Authors:  Kushal Suryamohan; Marc S Halfon
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2014-12-29       Impact factor: 5.814

2.  Adrenergic receptor signaling induced by Klf15, a regulator of regeneration enhancer, promotes kidney reconstruction.

Authors:  Nanoka Suzuki; Akinori Kanai; Yutaka Suzuki; Hajime Ogino; Haruki Ochi
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

Review 3.  Regeneration enhancers: A clue to reactivation of developmental genes.

Authors:  Nanoka Suzuki; Haruki Ochi
Journal:  Dev Growth Differ       Date:  2020-02-25       Impact factor: 2.053

  3 in total

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