Literature DB >> 23796714

Systems biological approaches to measure and understand vaccine immunity in humans.

Shuzhao Li1, Helder I Nakaya, Dmitri A Kazmin, Jason Z Oh, Bali Pulendran.   

Abstract

Recent studies have demonstrated the utility of using systems approaches to identify molecular signatures that can be used to predict vaccine immunity in humans. Such approaches are now being used extensively in vaccinology, and are beginning to yield novel insights about the molecular networks driving vaccine immunity. In this review, we present a broad review of the methodologies involved in these studies, and discuss the promise and challenges involved in this emerging field of "systems vaccinology."
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Systems biology; Systems vaccinology; Vaccines

Mesh：

Substances：

Year:  2013        PMID： 23796714      PMCID： PMC3797847          DOI： 10.1016/j.smim.2013.05.003

Source DB:  PubMed          Journal:  Semin Immunol        ISSN： 1044-5323            Impact factor:   11.130


  157 in total

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Review 3.  Tumor metabolism as modulator of immune response and tumor progression.

Authors:  Eva Gottfried; Marina Kreutz; Andreas Mackensen
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4.  Glutamate released by dendritic cells as a novel modulator of T cell activation.

Authors:  Rodrigo Pacheco; Harold Oliva; José M Martinez-Navío; Núria Climent; Francisco Ciruela; José M Gatell; Teresa Gallart; Josefa Mallol; Carmen Lluis; Rafael Franco
Journal:  J Immunol       Date:  2006-11-15       Impact factor: 5.422

5.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

6.  Branched tricarboxylic acid metabolism in Plasmodium falciparum.

Authors:  Kellen L Olszewski; Michael W Mather; Joanne M Morrisey; Benjamin A Garcia; Akhil B Vaidya; Joshua D Rabinowitz; Manuel Llinás
Journal:  Nature       Date:  2010-08-05       Impact factor: 49.962

Review 7.  Systems vaccinology.

Authors:  Bali Pulendran; Shuzhao Li; Helder I Nakaya
Journal:  Immunity       Date:  2010-10-29       Impact factor: 31.745

8.  An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.

Authors:  Matthew P R Berry; Christine M Graham; Finlay W McNab; Zhaohui Xu; Susannah A A Bloch; Tolu Oni; Katalin A Wilkinson; Romain Banchereau; Jason Skinner; Robert J Wilkinson; Charles Quinn; Derek Blankenship; Ranju Dhawan; John J Cush; Asuncion Mejias; Octavio Ramilo; Onn M Kon; Virginia Pascual; Jacques Banchereau; Damien Chaussabel; Anne O'Garra
Journal:  Nature       Date:  2010-08-19       Impact factor: 49.962

9.  From genomics to chemical genomics: new developments in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals.

Authors:  Vladimir Litvak; Stephen A Ramsey; Alistair G Rust; Daniel E Zak; Kathleen A Kennedy; Aaron E Lampano; Matti Nykter; Ilya Shmulevich; Alan Aderem
Journal:  Nat Immunol       Date:  2009-03-08       Impact factor: 25.606
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  36 in total

1.  Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures.

Authors:  Helder I Nakaya; Thomas Hagan; Sai S Duraisingham; Eva K Lee; Marcin Kwissa; Nadine Rouphael; Daniela Frasca; Merril Gersten; Aneesh K Mehta; Renaud Gaujoux; Gui-Mei Li; Shakti Gupta; Rafi Ahmed; Mark J Mulligan; Shai Shen-Orr; Bonnie B Blomberg; Shankar Subramaniam; Bali Pulendran
Journal:  Immunity       Date:  2015-12-15       Impact factor: 31.745

Review 2.  Proteomic contributions to our understanding of vaccine and immune responses.

Authors:  Allison C Galassie; Andrew J Link
Journal:  Proteomics Clin Appl       Date:  2015-09-10       Impact factor: 3.494

Review 3.  Malaria vaccine clinical trials: what's on the horizon.

Authors:  Alberto Moreno; Chester Joyner
Journal:  Curr Opin Immunol       Date:  2015-07-13       Impact factor: 7.486

Review 4.  Vaccinology in the era of high-throughput biology.

Authors:  Helder I Nakaya; Bali Pulendran
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-06-19       Impact factor: 6.237

5.  Proteomics show antigen presentation processes in human immune cells after AS03-H5N1 vaccination.

Authors:  Allison C Galassie; Johannes B Goll; Parimal Samir; Travis L Jensen; Kristen L Hoek; Leigh M Howard; Tara M Allos; Xinnan Niu; Laura E Gordy; C Buddy Creech; Heather Hill; Sebastian Joyce; Kathryn M Edwards; Andrew J Link
Journal:  Proteomics       Date:  2017-06       Impact factor: 3.984

6.  History of vaccination.

Authors:  Stanley Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

7.  Blood Gene Signatures of Chagas Cardiomyopathy With or Without Ventricular Dysfunction.

Authors:  Ludmila Rodrigues Pinto Ferreira; Frederico Moraes Ferreira; Helder Imoto Nakaya; Xutao Deng; Darlan da Silva Cândido; Lea Campos de Oliveira; Jean-Noel Billaud; Marion C Lanteri; Vagner Oliveira-Carvalho Rigaud; Mark Seielstad; Jorge Kalil; Fabio Fernandes; Antonio Luiz P Ribeiro; Ester Cerdeira Sabino; Edecio Cunha-Neto
Journal:  J Infect Dis       Date:  2017-02-01       Impact factor: 5.226

Review 8.  Modeling HIV vaccine trials of the future.

Authors:  Peter B Gilbert; Ying Huang; Holly E Janes
Journal:  Curr Opin HIV AIDS       Date:  2016-11       Impact factor: 4.283

9.  Plasma Metabolomics of Common Marmosets (Callithrix jacchus) to Evaluate Diet and Feeding Husbandry.

Authors:  Sophia A Banton; Quinlyn A Soltow; Ken H Liu; Karan Uppal; Daniel E L Promislow; Michael L Power; Suzette D Tardif; Lynn M Wachtman; Dean P Jones
Journal:  J Am Assoc Lab Anim Sci       Date:  2016-03       Impact factor: 1.232

Review 10.  Molecular mechanisms for enhanced DNA vaccine immunogenicity.

Authors:  Lei Li; Nikolai Petrovsky
Journal:  Expert Rev Vaccines       Date:  2015-12-28       Impact factor: 5.217
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