Literature DB >> 23794393

High-dimensional NMR spectra for structural studies of biomolecules.

Krzysztof Kazimierczuk1, Jan Stanek, Anna Zawadzka-Kazimierczuk, Wiktor Koźmiński.   

Abstract

Recent developments in the acquisition and processing of NMR data sets facilitate the recording of ultra-high-resolution NMR spectra in a reasonable time. The new experiments allow easy resonance assignment for folded and unfolded proteins, as well as the precise determination of spectral parameters, for example, chemical shifts, NOE contacts, coupling constants or cross-correlated relaxation rates. Owing to exceptional resolution of 4D-6D spectroscopy, detailed studies of biomolecules of unprecedented complexity are now possible. Herein, the principles of acquisition and processing methods are presented. The main applications of high-dimensional NMR experiments, including backbone and side-chain resonance assignment in proteins, as well as heteronuclear edited NOE techniques are reviewed.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  NMR spectroscopy; bioorganic chemistry; nonuniform sampling; proteins; sparse sampling

Mesh:

Substances:

Year:  2013        PMID: 23794393     DOI: 10.1002/cphc.201300277

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  13 in total

1.  Bridge over troubled proline: assignment of intrinsically disordered proteins using (HCA)CON(CAN)H and (HCA)N(CA)CO(N)H experiments concomitantly with HNCO and i(HCA)CO(CA)NH.

Authors:  Maarit Hellman; Henni Piirainen; Veli-Pekka Jaakola; Perttu Permi
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

2.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

3.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

Authors:  Alessandro Piai; Tomáš Hošek; Leonardo Gonnelli; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Bernhard Brutscher; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

Review 4.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

Review 5.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

6.  Accelerating multidimensional NMR and MRI experiments using iterated maps.

Authors:  Merideth A Frey; Zachary M Sethna; Gregory A Manley; Suvrajit Sengupta; Kurt W Zilm; J Patrick Loria; Sean E Barrett
Journal:  J Magn Reson       Date:  2013-09-21       Impact factor: 2.229

7.  Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins.

Authors:  Alessandro Piai; Leonardo Gonnelli; Isabella C Felli; Roberta Pierattelli; Krzysztof Kazimierczuk; Katarzyna Grudziąż; Wiktor Koźmiński; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2016-02-18       Impact factor: 2.835

8.  Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-24       Impact factor: 2.835

9.  Time-resolved multidimensional NMR with non-uniform sampling.

Authors:  Maxim Mayzel; Joakim Rosenlöw; Linnéa Isaksson; Vladislav Y Orekhov
Journal:  J Biomol NMR       Date:  2014-01-17       Impact factor: 2.835

10.  High resolution 4D HPCH experiment for sequential assignment of (13)C-labeled RNAs via phosphodiester backbone.

Authors:  Saurabh Saxena; Jan Stanek; Mirko Cevec; Janez Plavec; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-26       Impact factor: 2.835

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