Literature DB >> 23793747

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis.

Ke Liu1, Zhangming Yan, Yuchao Li, Zhirong Sun.   

Abstract

UNLABELLED: Large numbers of long intergenic non-coding RNA (lincRNA) have been detected through high-throughput sequencing technology. However, currently we still know very little about their functions. Therefore, a lincRNA function annotation database is needed to facilitate the study in this field. In this article, we present Linc2GO, a web resource that aims to provide comprehensive functional annotations for human lincRNA. MicroRNA-mRNA and microRNA-lincRNA interaction data were integrated to generate lincRNA functional annotations based on the 'competing endogenous RNA hypothesis'. To the best of our knowledge, Linc2GO is the first database that makes use of the 'competing endogenous RNA hypothesis' to predict lincRNA functions. AVAILABILITY: Freely available at http://www.bioinfo.tsinghua.edu.cn/~liuke/Linc2GO/index.html

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Year:  2013        PMID: 23793747     DOI: 10.1093/bioinformatics/btt361

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  49 in total

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Review 2.  Endogenous microRNA sponges: evidence and controversy.

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3.  AnnoLnc: A One-Stop Portal to Systematically Annotate Novel Human Long Noncoding RNAs.

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4.  Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer.

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Journal:  Nucleic Acids Res       Date:  2015-03-23       Impact factor: 16.971

Review 5.  A critical overview of long non-coding RNA in glioma etiology 2016: an update.

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6.  Using RNA sequencing to identify a putative lncRNA-associated ceRNA network in laryngeal squamous cell carcinoma.

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Journal:  RNA Biol       Date:  2020-03-30       Impact factor: 4.652

7.  miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs.

Authors:  Peng Wang; Hui Zhi; Yunpeng Zhang; Yue Liu; Jizhou Zhang; Yue Gao; Maoni Guo; Shangwei Ning; Xia Li
Journal:  Database (Oxford)       Date:  2015-09-30       Impact factor: 3.451

8.  Integrated analysis identifying long non-coding RNAs (lncRNAs) for competing endogenous RNAs (ceRNAs) network-regulated palatal shelf fusion in the development of mouse cleft palate.

Authors:  Xuan Shu; Zejun Dong; Mingjun Zhang; Shenyou Shu
Journal:  Ann Transl Med       Date:  2019-12

9.  Construction and investigation of breast-cancer-specific ceRNA network based on the mRNA and miRNA expression data.

Authors:  Xionghui Zhou; Juan Liu; Wei Wang
Journal:  IET Syst Biol       Date:  2014-06       Impact factor: 1.615

Review 10.  Long Non-coding RNAs: Mechanisms, Experimental, and Computational Approaches in Identification, Characterization, and Their Biomarker Potential in Cancer.

Authors:  Anshika Chowdhary; Venkata Satagopam; Reinhard Schneider
Journal:  Front Genet       Date:  2021-07-01       Impact factor: 4.599

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