Literature DB >> 23793632

Novel, oxygen-insensitive group 5 [NiFe]-hydrogenase in Ralstonia eutropha.

Caspar Schäfer1, Bärbel Friedrich, Oliver Lenz.   

Abstract

Recently, a novel group of [NiFe]-hydrogenases has been defined that appear to have a great impact in the global hydrogen cycle. This so-called group 5 [NiFe]-hydrogenase is widespread in soil-living actinobacteria and can oxidize molecular hydrogen at atmospheric levels, which suggests a high affinity of the enzyme toward H2. Here, we provide a biochemical characterization of a group 5 hydrogenase from the betaproteobacterium Ralstonia eutropha H16. The hydrogenase was designated an actinobacterial hydrogenase (AH) and is catalytically active, as shown by the in vivo H2 uptake and by activity staining in native gels. However, the enzyme does not sustain autotrophic growth on H2. The AH was purified to homogeneity by affinity chromatography and consists of two subunits with molecular masses of 65 and 37 kDa. Among the electron acceptors tested, nitroblue tetrazolium chloride was reduced by the AH at highest rates. At 30°C and pH 8, the specific activity of the enzyme was 0.3 μmol of H2 per min and mg of protein. However, an unexpectedly high Michaelis constant (Km) for H2 of 3.6 ± 0.5 μM was determined, which is in contrast to the previously proposed low Km of group 5 hydrogenases and makes atmospheric H2 uptake by R. eutropha most unlikely. Amperometric activity measurements revealed that the AH maintains full H2 oxidation activity even at atmospheric oxygen concentrations, showing that the enzyme is insensitive toward O2.

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Year:  2013        PMID: 23793632      PMCID: PMC3753944          DOI: 10.1128/AEM.01576-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  43 in total

1.  The Alcaligenes eutrophus H16 hoxX gene participates in hydrogenase regulation.

Authors:  O Lenz; E Schwartz; J Dernedde; M Eitinger; B Friedrich
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

2.  C-terminal extension of the H2-activating subunit, HoxH, directs maturation of the NAD-reducing hydrogenase in Alcaligenes eutrophus.

Authors:  C Massanz; V M Fernandez; B Friedrich
Journal:  Eur J Biochem       Date:  1997-04-15

3.  The H(2) sensor of Ralstonia eutropha is a member of the subclass of regulatory [NiFe] hydrogenases.

Authors:  L Kleihues; O Lenz; M Bernhard; T Buhrke; B Friedrich
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

4.  Aspartate 141 is the fourth ligand of the oxygen-sensing [4Fe-4S]2+ cluster of Bacillus subtilis transcriptional regulator Fnr.

Authors:  Ines Gruner; Claudia Frädrich; Lars H Böttger; Alfred X Trautwein; Dieter Jahn; Elisabeth Härtig
Journal:  J Biol Chem       Date:  2010-11-10       Impact factor: 5.157

5.  Structural and oxidation-state changes at its nonstandard Ni-Fe site during activation of the NAD-reducing hydrogenase from Ralstonia eutropha detected by X-ray absorption, EPR, and FTIR spectroscopy.

Authors:  Tanja Burgdorf; Simone Löscher; Peter Liebisch; Eddy Van der Linden; Marcus Galander; Friedhelm Lendzian; Wolfram Meyer-Klaucke; Simon P J Albracht; Bärbel Friedrich; Holger Dau; Michael Haumann
Journal:  J Am Chem Soc       Date:  2005-01-19       Impact factor: 15.419

6.  Oxygen-tolerant H2 oxidation by membrane-bound [NiFe] hydrogenases of ralstonia species. Coping with low level H2 in air.

Authors:  Marcus Ludwig; James A Cracknell; Kylie A Vincent; Fraser A Armstrong; Oliver Lenz
Journal:  J Biol Chem       Date:  2008-11-06       Impact factor: 5.157

7.  A kinetic and thermodynamic understanding of O2 tolerance in [NiFe]-hydrogenases.

Authors:  James A Cracknell; Annemarie F Wait; Oliver Lenz; Bärbel Friedrich; Fraser A Armstrong
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

8.  hyp gene products in Alcaligenes eutrophus are part of a hydrogenase-maturation system.

Authors:  J Dernedde; T Eitinger; N Patenge; B Friedrich
Journal:  Eur J Biochem       Date:  1996-01-15

Review 9.  Tropospheric H(2) budget and the response of its soil uptake under the changing environment.

Authors:  Philippe Constant; Laurier Poissant; Richard Villemur
Journal:  Sci Total Environ       Date:  2009-01-19       Impact factor: 7.963

10.  Zymographic differentiation of [NiFe]-hydrogenases 1, 2 and 3 of Escherichia coli K-12.

Authors:  Constanze Pinske; Monique Jaroschinsky; Frank Sargent; Gary Sawers
Journal:  BMC Microbiol       Date:  2012-07-06       Impact factor: 3.605

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  24 in total

1.  A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases.

Authors:  Chris Greening; Michael Berney; Kiel Hards; Gregory M Cook; Ralf Conrad
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

2.  Rubredoxin-related maturation factor guarantees metal cofactor integrity during aerobic biosynthesis of membrane-bound [NiFe] hydrogenase.

Authors:  Johannes Fritsch; Elisabeth Siebert; Jacqueline Priebe; Ingo Zebger; Friedhelm Lendzian; Christian Teutloff; Bärbel Friedrich; Oliver Lenz
Journal:  J Biol Chem       Date:  2014-01-21       Impact factor: 5.157

3.  A whole-cell, high-throughput hydrogenase assay to identify factors that modulate [NiFe]-hydrogenase activity.

Authors:  Michael J Lacasse; Stephanie Sebastiampillai; Jean-Philippe Côté; Nicholas Hodkinson; Eric D Brown; Deborah B Zamble
Journal:  J Biol Chem       Date:  2019-08-27       Impact factor: 5.157

4.  Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival.

Authors:  Chris Greening; Ambarish Biswas; Carlo R Carere; Colin J Jackson; Matthew C Taylor; Matthew B Stott; Gregory M Cook; Sergio E Morales
Journal:  ISME J       Date:  2015-09-25       Impact factor: 10.302

Review 5.  Atmospheric hydrogen scavenging: from enzymes to ecosystems.

Authors:  Chris Greening; Philippe Constant; Kiel Hards; Sergio E Morales; John G Oakeshott; Robyn J Russell; Matthew C Taylor; Michael Berney; Ralf Conrad; Gregory M Cook
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

6.  Characterization of the [3Fe-4S](0/1+) cluster from the D14C variant of Pyrococcus furiosus ferredoxin via combined NRVS and DFT analyses.

Authors:  Lars Lauterbach; Leland B Gee; Vladimir Pelmenschikov; Francis E Jenney; Saeed Kamali; Yoshitaka Yoda; Michael W W Adams; Stephen P Cramer
Journal:  Dalton Trans       Date:  2016-04-25       Impact factor: 4.390

7.  hypD as a marker for [NiFe]-hydrogenases in microbial communities of surface waters.

Authors:  Christian Beimgraben; Kirstin Gutekunst; Friederike Opitz; Jens Appel
Journal:  Appl Environ Microbiol       Date:  2014-04-11       Impact factor: 4.792

8.  Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging.

Authors:  Chris Greening; Carlo R Carere; Rowena Rushton-Green; Liam K Harold; Kiel Hards; Matthew C Taylor; Sergio E Morales; Matthew B Stott; Gregory M Cook
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

9.  Reversible [4Fe-3S] cluster morphing in an O(2)-tolerant [NiFe] hydrogenase.

Authors:  Stefan Frielingsdorf; Johannes Fritsch; Andrea Schmidt; Mathias Hammer; Julia Löwenstein; Elisabeth Siebert; Vladimir Pelmenschikov; Tina Jaenicke; Jacqueline Kalms; Yvonne Rippers; Friedhelm Lendzian; Ingo Zebger; Christian Teutloff; Martin Kaupp; Robert Bittl; Peter Hildebrandt; Bärbel Friedrich; Oliver Lenz; Patrick Scheerer
Journal:  Nat Chem Biol       Date:  2014-04-06       Impact factor: 15.040

10.  Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence.

Authors:  Paul R F Cordero; Rhys Grinter; Kiel Hards; Max J Cryle; Coral G Warr; Gregory M Cook; Chris Greening
Journal:  J Biol Chem       Date:  2019-10-17       Impact factor: 5.157

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