Literature DB >> 27063792

Characterization of the [3Fe-4S](0/1+) cluster from the D14C variant of Pyrococcus furiosus ferredoxin via combined NRVS and DFT analyses.

Lars Lauterbach1, Leland B Gee2, Vladimir Pelmenschikov3, Francis E Jenney4, Saeed Kamali5, Yoshitaka Yoda6, Michael W W Adams7, Stephen P Cramer8.   

Abstract

The D14C variant of Pyrococcus furiosus ferredoxin provides an extraordinary framework to investigate a [3Fe-4S] cluster at two oxidation levels and compare the results to its physiologic [4Fe-4S] counterpart in the very same protein. Our spectroscopic and computational study reveals vibrational property changes related to the electronic and structural aspects of both Fe-S clusters.

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Year:  2016        PMID： 27063792      PMCID： PMC4940129          DOI： 10.1039/c5dt04760a

Source DB:  PubMed          Journal:  Dalton Trans        ISSN： 1477-9226            Impact factor:   4.390


  35 in total

1.  Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase.

Authors:  Yasuhito Shomura; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

2.  Quantum chemical calculations of the reorganization energy of blue-copper proteins.

Authors:  M H Olsson; U Ryde; B O Roos
Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

Review 3.  Nuclear resonance vibrational spectroscopy--NRVS.

Authors:  W Robert Scheidt; Stephen M Durbin; J Timothy Sage
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

4.  Metalloenzymes: the entatic nature of their active sites.

Authors:  B L Vallee; R J Williams
Journal:  Proc Natl Acad Sci U S A       Date:  1968-02       Impact factor: 11.205

5.  Intact functional fourteen-subunit respiratory membrane-bound [NiFe]-hydrogenase complex of the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Patrick M McTernan; Sanjeev K Chandrayan; Chang-Hao Wu; Brian J Vaccaro; W Andrew Lancaster; Qingyuan Yang; Dax Fu; Greg L Hura; John A Tainer; Michael W W Adams
Journal:  J Biol Chem       Date:  2014-05-23       Impact factor: 5.157

6.  Oxidized and reduced Azotobacter vinelandii ferredoxin I at 1.4 A resolution: conformational change of surface residues without significant change in the [3Fe-4S]+/0 cluster.

Authors:  C G Schipke; D B Goodin; D E McRee; C D Stout
Journal:  Biochemistry       Date:  1999-06-29       Impact factor: 3.162

7.  Dynamics of Rhodobacter capsulatus [2FE-2S] ferredoxin VI and Aquifex aeolicus ferredoxin 5 via nuclear resonance vibrational spectroscopy (NRVS) and resonance Raman spectroscopy.

Authors:  Yuming Xiao; Ming-Liang Tan; Toshiko Ichiye; Hongxin Wang; Yisong Guo; Matt C Smith; Jacques Meyer; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Yoshitaka Yoda; Stephen P Cramer
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

8.  The F₄₂₀-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member.

Authors:  Stella Vitt; Kesen Ma; Eberhard Warkentin; Johanna Moll; Antonio J Pierik; Seigo Shima; Ulrich Ermler
Journal:  J Mol Biol       Date:  2014-06-02       Impact factor: 5.469

9.  Redox-dependent structural transformations of the [4Fe-3S] proximal cluster in O2-tolerant membrane-bound [NiFe]-hydrogenase: a DFT study.

Authors:  Vladimir Pelmenschikov; Martin Kaupp
Journal:  J Am Chem Soc       Date:  2013-08-05       Impact factor: 15.419

10.  Structural characterization of CO-inhibited Mo-nitrogenase by combined application of nuclear resonance vibrational spectroscopy, extended X-ray absorption fine structure, and density functional theory: new insights into the effects of CO binding and the role of the interstitial atom.

Authors:  Aubrey D Scott; Vladimir Pelmenschikov; Yisong Guo; Lifen Yan; Hongxin Wang; Simon J George; Christie H Dapper; William E Newton; Yoshitaka Yoda; Yoshihito Tanaka; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2014-11-03       Impact factor: 15.419
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  5 in total

1.  NRVS for Fe in Biology: Experiment and Basic Interpretation.

Authors:  Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Methods Enzymol       Date:  2017-12-16       Impact factor: 1.600

2.  On the Structure and Reaction Mechanism of Human Acireductone Dioxygenase.

Authors:  Anna Miłaczewska; Ewa Kot; José A Amaya; Thomas M Makris; Marcin Zając; Józef Korecki; Aleksandr Chumakov; Bartosz Trzewik; Sylwia Kędracka-Krok; Władek Minor; Maksymilian Chruszcz; Tomasz Borowski
Journal:  Chemistry       Date:  2018-01-11       Impact factor: 5.236

3.  Hydroxy-bridged resting states of a [NiFe]-hydrogenase unraveled by cryogenic vibrational spectroscopy and DFT computations.

Authors:  Giorgio Caserta; Vladimir Pelmenschikov; Christian Lorent; Armel F Tadjoung Waffo; Sagie Katz; Lars Lauterbach; Janna Schoknecht; Hongxin Wang; Yoshitaka Yoda; Kenji Tamasaku; Martin Kaupp; Peter Hildebrandt; Oliver Lenz; Stephen P Cramer; Ingo Zebger
Journal:  Chem Sci       Date:  2020-12-11       Impact factor: 9.825

4.  NRVS and DFT of MitoNEET: Understanding the Special Vibrational Structure of a [2Fe-2S] Cluster with (Cys)3(His)1 Ligation.

Authors:  Leland B Gee; Vladimir Pelmenschikov; Cécile Mons; Nakul Mishra; Hongxin Wang; Yoshitaka Yoda; Kenji Tamasaku; Marie-Pierre Golinelli-Cohen; Stephen P Cramer
Journal:  Biochemistry       Date:  2021-07-26       Impact factor: 3.162

5.  Insights from 125Te and 57Fe nuclear resonance vibrational spectroscopy: a [4Fe-4Te] cluster from two points of view.

Authors:  Florian Wittkamp; Nakul Mishra; Hongxin Wang; Hans-Christian Wille; René Steinbrügge; Martin Kaupp; Stephen P Cramer; Ulf-Peter Apfel; Vladimir Pelmenschikov
Journal:  Chem Sci       Date:  2019-06-24       Impact factor: 9.825
  5 in total

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