Literature DB >> 23778706

SLC classification: an update.

A Schlessinger1, S W Yee, A Sali, K M Giacomini.   

Abstract

The 386 human SLC superfamily members are diverse in sequence, structure, and function. Using sequence similarity, we previously classified the SLC superfamily members and identified relationships among families. With the recent determination of new SLC structures and identification of previously unknown human SLC families, an update of our previous classification is timely. Here, we comprehensively compare the SLC sequences and structures and discuss the applicability of structure-based ligand discovery to key SLC members.

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Year:  2013        PMID: 23778706      PMCID: PMC4068830          DOI: 10.1038/clpt.2013.73

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  23 in total

1.  Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli.

Authors:  Yafei Huang; M Joanne Lemieux; Jinmei Song; Manfred Auer; Da-Neng Wang
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

2.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

3.  Structure of a glutamate transporter homologue from Pyrococcus horikoshii.

Authors:  Dinesh Yernool; Olga Boudker; Yan Jin; Eric Gouaux
Journal:  Nature       Date:  2004-10-14       Impact factor: 49.962

4.  A hidden Markov model for predicting transmembrane helices in protein sequences.

Authors:  E L Sonnhammer; G von Heijne; A Krogh
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1998

5.  Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter.

Authors:  Romina Mancusso; G Glenn Gregorio; Qun Liu; Da-Neng Wang
Journal:  Nature       Date:  2012-10-21       Impact factor: 49.962

Review 6.  The ABCs of solute carriers: physiological, pathological and therapeutic implications of human membrane transport proteinsIntroduction.

Authors:  Matthias A Hediger; Michael F Romero; Ji-Bin Peng; Andreas Rolfs; Hitomi Takanaga; Elspeth A Bruford
Journal:  Pflugers Arch       Date:  2003-11-18       Impact factor: 3.657

7.  Crystal structure of a eukaryotic phosphate transporter.

Authors:  Bjørn P Pedersen; Hemant Kumar; Andrew B Waight; Aaron J Risenmay; Zygy Roe-Zurz; Bryant H Chau; Avner Schlessinger; Massimiliano Bonomi; William Harries; Andrej Sali; Atul K Johri; Robert M Stroud
Journal:  Nature       Date:  2013-03-31       Impact factor: 49.962

8.  Crystal structure of a bacterial homologue of the bile acid sodium symporter ASBT.

Authors:  Nien-Jen Hu; So Iwata; Alexander D Cameron; David Drew
Journal:  Nature       Date:  2011-10-05       Impact factor: 49.962

9.  Crystal structure of a concentrative nucleoside transporter from Vibrio cholerae at 2.4 Å.

Authors:  Zachary Lee Johnson; Cheom-Gil Cheong; Seok-Yong Lee
Journal:  Nature       Date:  2012-03-11       Impact factor: 49.962

10.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  34 in total

1.  Structural insights into thyroid hormone transport mechanisms of the L-type amino acid transporter 2.

Authors:  Katrin M Hinz; Katja Meyer; Anita Kinne; Ralf Schülein; Josef Köhrle; Gerd Krause
Journal:  Mol Endocrinol       Date:  2015-05-06

2.  Structure-Based Identification of Inhibitors for the SLC13 Family of Na(+)/Dicarboxylate Cotransporters.

Authors:  Claire Colas; Ana M Pajor; Avner Schlessinger
Journal:  Biochemistry       Date:  2015-07-30       Impact factor: 3.162

Review 3.  Pharmacogenetics of Membrane Transporters of Tacrolimus in Solid Organ Transplantation.

Authors:  Camille Tron; Florian Lemaitre; Céline Verstuyft; Antoine Petitcollin; Marie-Clémence Verdier; Eric Bellissant
Journal:  Clin Pharmacokinet       Date:  2019-05       Impact factor: 6.447

Review 4.  Nutrition and Bipartite Metabolism of Intracellular Pathogens.

Authors:  Ashley Best; Yousef Abu Kwaik
Journal:  Trends Microbiol       Date:  2019-01-14       Impact factor: 17.079

Review 5.  Advances and Challenges in Rational Drug Design for SLCs.

Authors:  Rachel-Ann A Garibsingh; Avner Schlessinger
Journal:  Trends Pharmacol Sci       Date:  2019-09-10       Impact factor: 14.819

6.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
Journal:  Chem Rev       Date:  2019-02-13       Impact factor: 60.622

Review 7.  SLC transporters as therapeutic targets: emerging opportunities.

Authors:  Lawrence Lin; Sook Wah Yee; Richard B Kim; Kathleen M Giacomini
Journal:  Nat Rev Drug Discov       Date:  2015-06-26       Impact factor: 84.694

Review 8.  What do drug transporters really do?

Authors:  Sanjay K Nigam
Journal:  Nat Rev Drug Discov       Date:  2014-12-05       Impact factor: 84.694

9.  Determinants of substrate and cation transport in the human Na+/dicarboxylate cotransporter NaDC3.

Authors:  Avner Schlessinger; Nina N Sun; Claire Colas; Ana M Pajor
Journal:  J Biol Chem       Date:  2014-05-07       Impact factor: 5.157

10.  SLC Transporters: Structure, Function, and Drug Discovery.

Authors:  Claire Colas; Peter Man-Un Ung; Avner Schlessinger
Journal:  Medchemcomm       Date:  2016-03-28       Impact factor: 3.597

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