Literature DB >> 31519459

Advances and Challenges in Rational Drug Design for SLCs.

Rachel-Ann A Garibsingh1, Avner Schlessinger2.   

Abstract

There are over 420 human solute carrier (SLC) transporters from 65 families that are expressed ubiquitously in the body. The SLCs mediate the movement of ions, drugs, and metabolites across membranes and their dysfunction has been associated with a variety of diseases, such as diabetes, cancer, and central nervous system (CNS) disorders. Thus, SLCs are emerging as important targets for therapeutic intervention. Recent technological advances in experimental and computational biology allow better characterization of SLC pharmacology. Here we describe recent approaches to modulate SLC transporter function, with an emphasis on the use of computational approaches and computer-aided drug design (CADD) to study nutrient transporters. Finally, we discuss future perspectives in the rational design of SLC drugs.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  computer-aided drug design; membrane transporter; protein structure prediction; solute carrier; structure-based drug discovery

Mesh:

Substances:

Year:  2019        PMID: 31519459      PMCID: PMC7082830          DOI: 10.1016/j.tips.2019.08.006

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  88 in total

Review 1.  Advancing Drug Discovery via Artificial Intelligence.

Authors:  H C Stephen Chan; Hanbin Shan; Thamani Dahoun; Horst Vogel; Shuguang Yuan
Journal:  Trends Pharmacol Sci       Date:  2019-07-15       Impact factor: 14.819

2.  Direct visualization of glutamate transporter elevator mechanism by high-speed AFM.

Authors:  Yi Ruan; Atsushi Miyagi; Xiaoyu Wang; Mohamed Chami; Olga Boudker; Simon Scheuring
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

3.  2-Substituted Nγ-glutamylanilides as novel probes of ASCT2 with improved potency.

Authors:  Michael L Schulte; Eric S Dawson; Sam A Saleh; Madison L Cuthbertson; H Charles Manning
Journal:  Bioorg Med Chem Lett       Date:  2014-11-11       Impact factor: 2.823

4.  Cryo-EM structure of the human neutral amino acid transporter ASCT2.

Authors:  Alisa A Garaeva; Gert T Oostergetel; Cornelius Gati; Albert Guskov; Cristina Paulino; Dirk J Slotboom
Journal:  Nat Struct Mol Biol       Date:  2018-06-05       Impact factor: 15.369

5.  Structure activity relationships of benzylproline-derived inhibitors of the glutamine transporter ASCT2.

Authors:  Kurnvir Singh; Rose Tanui; Armanda Gameiro; Gilad Eisenberg; Claire Colas; Avner Schlessinger; Christof Grewer
Journal:  Bioorg Med Chem Lett       Date:  2016-12-27       Impact factor: 2.823

Review 6.  Predicting Binding Free Energies: Frontiers and Benchmarks.

Authors:  David L Mobley; Michael K Gilson
Journal:  Annu Rev Biophys       Date:  2017-04-07       Impact factor: 12.981

7.  Chemical Modulation of the Human Oligopeptide Transporter 1, hPepT1.

Authors:  Claire Colas; Masayuki Masuda; Kazuaki Sugio; Seiji Miyauchi; Yongjun Hu; David E Smith; Avner Schlessinger
Journal:  Mol Pharm       Date:  2017-11-15       Impact factor: 4.939

8.  Computing Substrate Selectivity in a Peptide Transporter.

Authors:  Claire Colas; David E Smith; Avner Schlessinger
Journal:  Cell Chem Biol       Date:  2016-02-18       Impact factor: 8.116

9.  Automatic Chemical Design Using a Data-Driven Continuous Representation of Molecules.

Authors:  Rafael Gómez-Bombarelli; Jennifer N Wei; David Duvenaud; José Miguel Hernández-Lobato; Benjamín Sánchez-Lengeling; Dennis Sheberla; Jorge Aguilera-Iparraguirre; Timothy D Hirzel; Ryan P Adams; Alán Aspuru-Guzik
Journal:  ACS Cent Sci       Date:  2018-01-12       Impact factor: 14.553

10.  Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening.

Authors:  Claire Colas; Christof Grewer; Nicholas James Otte; Armanda Gameiro; Thomas Albers; Kurnvir Singh; Helen Shere; Massimiliano Bonomi; Jeff Holst; Avner Schlessinger
Journal:  PLoS Comput Biol       Date:  2015-10-07       Impact factor: 4.475

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  14 in total

Review 1.  Post-translational regulation of the major drug transporters in the families of organic anion transporters and organic anion-transporting polypeptides.

Authors:  Wooin Lee; Jeong-Min Ha; Yuichi Sugiyama
Journal:  J Biol Chem       Date:  2020-10-13       Impact factor: 5.157

2.  Proteomic analysis reveals key differences between squamous cell carcinomas and adenocarcinomas across multiple tissues.

Authors:  Qi Song; Ye Yang; Dongxian Jiang; Zhaoyu Qin; Chen Xu; Haixing Wang; Jie Huang; Lingli Chen; Rongkui Luo; Xiaolei Zhang; Yufeng Huang; Lei Xu; Zixiang Yu; Subei Tan; Minying Deng; Ruqun Xue; Jingbo Qie; Kai Li; Yanan Yin; Xuetong Yue; Xiaogang Sun; Jieakesu Su; Fuchu He; Chen Ding; Yingyong Hou
Journal:  Nat Commun       Date:  2022-07-18       Impact factor: 17.694

Review 3.  An Overview of Cell-Based Assay Platforms for the Solute Carrier Family of Transporters.

Authors:  Vojtech Dvorak; Tabea Wiedmer; Alvaro Ingles-Prieto; Patrick Altermatt; Helena Batoulis; Felix Bärenz; Eckhard Bender; Daniela Digles; Franz Dürrenberger; Laura H Heitman; Adriaan P IJzerman; Douglas B Kell; Stefanie Kickinger; Daniel Körzö; Philipp Leippe; Thomas Licher; Vania Manolova; Riccardo Rizzetto; Francesca Sassone; Lia Scarabottolo; Avner Schlessinger; Vanessa Schneider; Hubert J Sijben; Anna-Lena Steck; Hanna Sundström; Sara Tremolada; Maria Wilhelm; Marina Wright Muelas; Diana Zindel; Claire M Steppan; Giulio Superti-Furga
Journal:  Front Pharmacol       Date:  2021-08-10       Impact factor: 5.988

Review 4.  Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.

Authors:  Stephen J Fairweather; Nishank Shah; Stefan Brӧer
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 5.  A guide to plasma membrane solute carrier proteins.

Authors:  Mattia D Pizzagalli; Ariel Bensimon; Giulio Superti-Furga
Journal:  FEBS J       Date:  2020-09-18       Impact factor: 5.542

6.  SLC7A2 serves as a potential biomarker and therapeutic target for ovarian cancer.

Authors:  Tianshui Sun; Fangfang Bi; Zhuonan Liu; Qing Yang
Journal:  Aging (Albany NY)       Date:  2020-07-09       Impact factor: 5.682

7.  Rational design of ASCT2 inhibitors using an integrated experimental-computational approach.

Authors:  Rachel-Ann A Garibsingh; Elias Ndaru; Alisa A Garaeva; Yueyue Shi; Laura Zielewicz; Paul Zakrepine; Massimiliano Bonomi; Dirk J Slotboom; Cristina Paulino; Christof Grewer; Avner Schlessinger
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 12.779

Review 8.  Recent advances in understanding prodrug transport through the SLC15 family of proton-coupled transporters.

Authors:  Gurdeep S Minhas; Simon Newstead
Journal:  Biochem Soc Trans       Date:  2020-04-29       Impact factor: 5.407

Review 9.  The Transporter-Mediated Cellular Uptake and Efflux of Pharmaceutical Drugs and Biotechnology Products: How and Why Phospholipid Bilayer Transport Is Negligible in Real Biomembranes.

Authors:  Douglas B Kell
Journal:  Molecules       Date:  2021-09-16       Impact factor: 4.411

10.  Solute carrier family 12 member 8 (SLC12A8) is a potential biomarker and related to tumor immune cell infiltration in bladder cancer.

Authors:  Qian Zhang; Yunen Liu; Peng Chen; Xiuyun Shi; Ying Liu; Lin Shi; Peifang Cong; Shun Mao; Cangci Tong; Cheng Du; Mingxiao Hou
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

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