| Literature DB >> 23776510 |
John P A Ioannidis1, Christine Q Chang, Tram Kim Lam, Sheri D Schully, Muin J Khoury.
Abstract
Meta-analyses are increasingly popular. It is unknown whether this popularity is driven by specific countries and specific meta-analyses types. PubMed was used to identify meta-analyses since 1995 (last update 9/1/2012) and catalogue their types and country of origin. We focused more on meta-analyses from China (the current top producer of meta-analyses) versus the USA (top producer until recently). The annual number of meta-analyses from China increased 40-fold between 2003 and 2011 versus 2.4-fold for the USA. The growth of Chinese meta-analyses was driven by genetics (110-fold increase in 2011 versus 2003). The HuGE Navigator identified 612 meta-analyses of genetic association studies published in 2012 from China versus only 109 from the USA. We compared in-depth 50 genetic association meta-analyses from China versus 50 from USA in 2012. Meta-analyses from China almost always used only literature-based data (92%), and focused on one or two genes (94%) and variants (78%) identified with candidate gene approaches (88%), while many USA meta-analyses used genome-wide approaches and raw data. Both groups usually concluded favorably for the presence of genetic associations (80% versus 74%), but nominal significance (P<0.05) typically sufficed in the China group. Meta-analyses from China typically neglected genome-wide data, and often included candidate gene studies published in Chinese-language journals. Overall, there is an impressive rise of meta-analyses from China, particularly on genetic associations. Since most claimed candidate gene associations are likely false-positives, there is an urgent global need to incorporate genome-wide data and state-of-the art statistical inferences to avoid a flood of false-positive genetic meta-analyses.Entities:
Mesh:
Year: 2013 PMID: 23776510 PMCID: PMC3680482 DOI: 10.1371/journal.pone.0065602
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Meta-analyses in PubMed According to Publication Year.
| Year | All | China | US |
| 1995 | 429 | 0 | 165 |
| 1996 | 482 | 1 | 197 |
| 1997 | 596 | 3 | 250 |
| 1998 | 639 | 0 | 235 |
| 1999 | 741 | 0 | 305 |
| 2000 | 849 | 2 | 335 |
| 2001 | 948 | 3 | 366 |
| 2002 | 1078 | 11 | 400 |
| 2003 | 1289 | 19 | 401 |
| 2004 | 1594 | 28 | 467 |
| 2005 | 2063 | 33 | 541 |
| 2006 | 2331 | 77 | 681 |
| 2007 | 2594 | 97 | 696 |
| 2008 | 2773 | 179 | 756 |
| 2009 | 3229 | 302 | 774 |
| 2010 | 3904 | 540 | 896 |
| 2011 | 4739 | 828 | 965 |
| 2012 (until search) | 2270 | 464 | 446 |
US: United States. When a paper in published as Epub and then final publication, the year of the final publication is counted. The same applies to data in tables 2 and 3.
Different Types of Meta-analyses Overall and from China.
| Any publication year | Published in 2012(until September 1 search) | |||
| Search strategy | All | China (%) | All | China (%) |
| Gene OR genetic OR polymorphism OR genome OR mutationOR haplotype | 3631 | 942 (26) | 441 | 210 (48) |
| Trial OR randomi* OR treatment | 23529 | 1307 (6) | 1388 | 195 (14) |
| Sensitivity | 1298 | 125 (10) | 99 | 24 (24) |
| Cohort OR case control | 1151 | 86 (7) | 62 | 10 (16) |
| Miscellaneous meta-analyses | 4629 | 127 (3) | 280 | 25 (9) |
| ALL META-ANALYSES | 34238 | 2587 (8) | 2270 | 464 (21) |
Genetics-related Meta-analyses.
| Year | All | China | US |
| 1995 | 12 | 0 | 6 |
| 1996 | 9 | 0 | 5 |
| 1997 | 31 | 1 | 15 |
| 1998 | 24 | 0 | 4 |
| 1999 | 40 | 0 | 13 |
| 2000 | 50 | 0 | 18 |
| 2001 | 61 | 0 | 23 |
| 2002 | 56 | 0 | 17 |
| 2003 | 91 | 3 | 22 |
| 2004 | 130 | 5 | 36 |
| 2005 | 155 | 9 | 37 |
| 2006 | 213 | 21 | 51 |
| 2007 | 245 | 26 | 56 |
| 2008 | 286 | 40 | 66 |
| 2009 | 394 | 81 | 75 |
| 2010 | 590 | 221 | 105 |
| 2011 | 774 | 327 | 137 |
| 2012 (until search) | 441 | 210 | 61 |
US: United States.
Figure 1Annual number of meta-analyses of genetic associations for the 10 most-prolific countries in the period 2000–2012; data are derived from HuGE Navigator (last update January 13, 2012).
Comparison of Characteristics of Genetic Association Meta-analyses Published in 2012 from China and US.
| Characteristic | China | US |
| |
| Journal impact factor, median (IQR) | 2.541 | 6.575 | <0.001 | |
| Number of authors | 1 | 2 | 0 | <0.001 |
| 2 | 2 | 2 | ||
| 3–5 | 18 | 8 | ||
| 6–10 | 25 | 5 | ||
| 11–50 | 3 | 21 | ||
| >50 | 0 | 14 | ||
| English language | 49 | 50 | 1.00 | |
| Disease/Phenotype | Cancer | 23 | 8 | 0.001 |
| Cardiovascular | 6 | 7 | ||
| Infectious diseases | 2 | 0 | ||
| Other disease | 14 | 17 | ||
| Non-disease | 5 | 18 | ||
| Type of data included | Literature | 46 | 14 | <0.001 |
| Investigators’ own | 0 | 12 | ||
| Both | 4 | 24 | ||
| Other unpublished data | 1 | 0 | 1.00 | |
| Number of genes assessed | 1 | 44 | 13 | <0.001 |
| 2 | 3 | 1 | ||
| 3 | 0 | 0 | ||
| >3 | 3 | 36 | ||
| Number of genetic variants assessed | 1 | 27 | 10 | <0.001 |
| 2 | 12 | 1 | ||
| 3 | 3 | 1 | ||
| >3 | 8 | 38 | ||
| New genes/variants proposed | Yes | 2 | 18 | <0.001 |
| No | 48 | 32 | ||
| If no, proposed genes from GWAS | None | 45 | 16 | <0.001 |
| Some | 0 | 0 | ||
| All | 5 | 16 | ||
| Metrics reported in the abstract | Relative risk | 43 | 15 | <0.001 |
| Absolute difference | 0 | 1 | ||
| Both | 0 | 0 | ||
| None | 7 | 34 | ||
US: United States.
Includes a study that evaluated a single intergenic variant.
Results and Conclusions of Genetic Association Meta-analyses Published in 2012 from China and US.
| All meta-analyses | Not GWAS genes | ||||
| China | US | China | US | ||
| N = 50 | N = 50 | N = 45 | N = 16 | ||
| Statistical model for synthesis** | Fixed effect only | 1 | 32 | 0 | 5 |
| Random effects only | 3 | 7 | 2 | 5 | |
| Both fixed and random | 46 | 11 | 43 | 6 | |
|
| <0.001 | <0.001 | |||
| Largest relative risk in abstract | Median, IQR | 1.75, 1.25 | 1.49, 1.74 | 1.75, 1.26 | 1.21, 2.08 |
|
| 0.86 | 0.078 | |||
| Largest significant relative risk in abstract | Median, IQR | 1.81, 1.31 | 1.66, 1.76 | 1.81, 1.31 | 1.21, 2.08 |
|
| 0.68 | 0.036 | |||
| Significant results in the abstract | 38 | 41 | 33 | 9 | |
|
| 0.62 | 0.22 | |||
| Any GWS results in the abstract | 1 | 23 | 0 | 0 | |
|
| <0.001 | 1.00 | |||
| Abstract conclusions on associations | Presence of association | 40 | 37*** | 35 | 8 |
|
| 0.63 | 0.055 | |||
| Ethnicity/ancestry differences | 12 | 4 | 11 | 3 | |
|
| 0.054 | 0.74 | |||
| Inheritance model-specific | 4 | 1 | 4 | 1 | |
|
| 0.36 | 1.00 | |||
| More evidence is needed | 15 | 9 | 13 | 6 | |
|
| 0.24 | 0.54 | |||
IQR: interquartile range, GWS: genome-wide significant, US: United States.
Includes only data from meta-analyses that include only candidate genetic variants that have not been validated in GWAS **Methods combining p-values or z-scores, or pooled analysis, were counted as equivalent to fixed effects; Mixed effects model was counted as random effects *** some studies with significant reported results are counted here, even if no concluding statement was made.