Literature DB >> 23768493

Convergent antibody signatures in human dengue.

Poornima Parameswaran1, Yi Liu, Krishna M Roskin, Katherine K L Jackson, Vaishali P Dixit, Ji-Yeun Lee, Karen L Artiles, Simona Zompi, Maria José Vargas, Birgitte B Simen, Bozena Hanczaruk, Kim R McGowan, Muhammad A Tariq, Nader Pourmand, Daphne Koller, Angel Balmaseda, Scott D Boyd, Eva Harris, Andrew Z Fire.   

Abstract

Dengue is the most prevalent mosquito-borne viral disease in humans, and the lack of early prognostics, vaccines, and therapeutics contributes to immense disease burden. To identify patterns that could be used for sequence-based monitoring of the antibody response to dengue, we examined antibody heavy-chain gene rearrangements in longitudinal peripheral blood samples from 60 dengue patients. Comparing signatures between acute dengue, postrecovery, and healthy samples, we found increased expansion of B cell clones in acute dengue patients, with higher overall clonality in secondary infection. Additionally, we observed consistent antibody sequence features in acute dengue in the highly variable major antigen-binding determinant, complementarity-determining region 3 (CDR3), with specific CDR3 sequences highly enriched in acute samples compared to postrecovery, healthy, or non-dengue samples. Dengue thus provides a striking example of a human viral infection where convergent immune signatures can be identified in multiple individuals. Such signatures could facilitate surveillance of immunological memory in communities.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23768493      PMCID: PMC4136508          DOI: 10.1016/j.chom.2013.05.008

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN: 1931-3128            Impact factor:   21.023


  42 in total

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2.  Developmental changes in the human heavy chain CDR3.

Authors:  M Margarida Souto-Carneiro; Gary P Sims; Hermann Girschik; Jisoo Lee; Peter E Lipsky
Journal:  J Immunol       Date:  2005-12-01       Impact factor: 5.422

3.  Universal epitopes of influenza virus hemagglutinins?

Authors:  Taia T Wang; Peter Palese
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4.  The extent of affinity maturation differs between the memory and antibody-forming cell compartments in the primary immune response.

Authors:  K G Smith; A Light; G J Nossal; D M Tarlinton
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

5.  Differences in dengue severity in infants, children, and adults in a 3-year hospital-based study in Nicaragua.

Authors:  Samantha Nadia Hammond; Angel Balmaseda; Leonel Pérez; Yolanda Tellez; Saira Indira Saborío; Juan Carlos Mercado; Elsa Videa; Yoryelin Rodriguez; Maria Angeles Pérez; Ricardo Cuadra; Soraya Solano; Julio Rocha; Wendy Idiaquez; Alcides Gonzalez; Eva Harris
Journal:  Am J Trop Med Hyg       Date:  2005-12       Impact factor: 2.345

6.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
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Review 7.  Pathogenesis of dengue: challenges to molecular biology.

Authors:  S B Halstead
Journal:  Science       Date:  1988-01-29       Impact factor: 47.728

8.  High-throughput sequencing of the zebrafish antibody repertoire.

Authors:  Joshua A Weinstein; Ning Jiang; Richard A White; Daniel S Fisher; Stephen R Quake
Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

9.  Immunopathology of follicular lymphomas. A model of B-lymphocyte homing.

Authors:  R Warnke; R Levy
Journal:  N Engl J Med       Date:  1978-03-02       Impact factor: 91.245

10.  Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements.

Authors:  Scott D Boyd; Bruno A Gaëta; Katherine J Jackson; Andrew Z Fire; Eleanor L Marshall; Jason D Merker; Jay M Maniar; Lyndon N Zhang; Bita Sahaf; Carol D Jones; Birgitte B Simen; Bozena Hanczaruk; Khoa D Nguyen; Kari C Nadeau; Michael Egholm; David B Miklos; James L Zehnder; Andrew M Collins
Journal:  J Immunol       Date:  2010-05-21       Impact factor: 5.422

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  125 in total

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Authors:  Jason A Vander Heiden; Panos Stathopoulos; Julian Q Zhou; Luan Chen; Tamara J Gilbert; Christopher R Bolen; Richard J Barohn; Mazen M Dimachkie; Emma Ciafaloni; Teresa J Broering; Francois Vigneault; Richard J Nowak; Steven H Kleinstein; Kevin C O'Connor
Journal:  J Immunol       Date:  2017-01-13       Impact factor: 5.422

2.  IgH sequences in common variable immune deficiency reveal altered B cell development and selection.

Authors:  Krishna M Roskin; Noa Simchoni; Yi Liu; Ji-Yeun Lee; Katie Seo; Ramona A Hoh; Tho Pham; Joon H Park; David Furman; Cornelia L Dekker; Mark M Davis; Judith A James; Kari C Nadeau; Charlotte Cunningham-Rundles; Scott D Boyd
Journal:  Sci Transl Med       Date:  2015-08-26       Impact factor: 17.956

3.  Selection of therapeutic H5N1 monoclonal antibodies following IgVH repertoire analysis in mice.

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Journal:  Antiviral Res       Date:  2016-04-21       Impact factor: 5.970

4.  Viral immunology. Comprehensive serological profiling of human populations using a synthetic human virome.

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Journal:  Science       Date:  2015-06-05       Impact factor: 47.728

5.  In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire.

Authors:  Brandon J DeKosky; Takaaki Kojima; Alexa Rodin; Wissam Charab; Gregory C Ippolito; Andrew D Ellington; George Georgiou
Journal:  Nat Med       Date:  2014-12-15       Impact factor: 53.440

6.  Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.

Authors:  Daniel Gadala-Maria; Gur Yaari; Mohamed Uduman; Steven H Kleinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

Review 7.  The evolution within us.

Authors:  Sarah Cobey; Patrick Wilson; Frederick A Matsen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-05       Impact factor: 6.237

Review 8.  Rationalizing Random Walks: Replicating Protective Antibody Trajectories.

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Journal:  Trends Immunol       Date:  2021-01-26       Impact factor: 16.687

Review 9.  Deconstructing the Antiviral Neutralizing-Antibody Response: Implications for Vaccine Development and Immunity.

Authors:  Laura A VanBlargan; Leslie Goo; Theodore C Pierson
Journal:  Microbiol Mol Biol Rev       Date:  2016-10-26       Impact factor: 11.056

10.  High-fat diet induces systemic B-cell repertoire changes associated with insulin resistance.

Authors:  T D Pham; M H Y Chng; K M Roskin; K J L Jackson; K D Nguyen; J Glanville; J-Y Lee; E G Engleman; S D Boyd
Journal:  Mucosal Immunol       Date:  2017-04-19       Impact factor: 7.313

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