Literature DB >> 23764236

Predicting acute aquatic toxicity of structurally diverse chemicals in fish using artificial intelligence approaches.

Kunwar P Singh1, Shikha Gupta, Premanjali Rai.   

Abstract

The research aims to develop global modeling tools capable of categorizing structurally diverse chemicals in various toxicity classes according to the EEC and European Community directives, and to predict their acute toxicity in fathead minnow using set of selected molecular descriptors. Accordingly, artificial intelligence approach based classification and regression models, such as probabilistic neural networks (PNN), generalized regression neural networks (GRNN), multilayer perceptron neural network (MLPN), radial basis function neural network (RBFN), support vector machines (SVM), gene expression programming (GEP), and decision tree (DT) were constructed using the experimental toxicity data. Diversity and non-linearity in the chemicals' data were tested using the Tanimoto similarity index and Brock-Dechert-Scheinkman statistics. Predictive and generalization abilities of various models constructed here were compared using several statistical parameters. PNN and GRNN models performed relatively better than MLPN, RBFN, SVM, GEP, and DT. Both in two and four category classifications, PNN yielded a considerably high accuracy of classification in training (95.85 percent and 90.07 percent) and validation data (91.30 percent and 86.96 percent), respectively. GRNN rendered a high correlation between the measured and model predicted -log LC50 values both for the training (0.929) and validation (0.910) data and low prediction errors (RMSE) of 0.52 and 0.49 for two sets. Efficiency of the selected PNN and GRNN models in predicting acute toxicity of new chemicals was adequately validated using external datasets of different fish species (fathead minnow, bluegill, trout, and guppy). The PNN and GRNN models showed good predictive and generalization abilities and can be used as tools for predicting toxicities of structurally diverse chemical compounds.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Acute aquatic toxicity; Artificial intelligence; Fish, diversity; Generalized regression neural network; Nonlinearity; Probabilistic neural network

Mesh:

Substances:

Year:  2013        PMID: 23764236     DOI: 10.1016/j.ecoenv.2013.05.017

Source DB:  PubMed          Journal:  Ecotoxicol Environ Saf        ISSN: 0147-6513            Impact factor:   6.291


  9 in total

1.  Nonlinear QSAR modeling for predicting cytotoxicity of ionic liquids in leukemia rat cell line: an aid to green chemicals designing.

Authors:  Shikha Gupta; Nikita Basant; Kunwar P Singh
Journal:  Environ Sci Pollut Res Int       Date:  2015-04-28       Impact factor: 4.223

2.  Modeling the binding affinity of structurally diverse industrial chemicals to carbon using the artificial intelligence approaches.

Authors:  Shikha Gupta; Nikita Basant; Premanjali Rai; Kunwar P Singh
Journal:  Environ Sci Pollut Res Int       Date:  2015-07-11       Impact factor: 4.223

3.  Modeling the toxicity of chemical pesticides in multiple test species using local and global QSTR approaches.

Authors:  Nikita Basant; Shikha Gupta; Kunwar P Singh
Journal:  Toxicol Res (Camb)       Date:  2015-12-10       Impact factor: 3.524

4.  Estimating sensory irritation potency of volatile organic chemicals using QSARs based on decision tree methods for regulatory purpose.

Authors:  Shikha Gupta; Nikita Basant; Kunwar P Singh
Journal:  Ecotoxicology       Date:  2015-02-24       Impact factor: 2.823

5.  Supervised extensions of chemography approaches: case studies of chemical liabilities assessment.

Authors:  Svetlana I Ovchinnikova; Arseniy A Bykov; Aslan Yu Tsivadze; Evgeny P Dyachkov; Natalia V Kireeva
Journal:  J Cheminform       Date:  2014-05-07       Impact factor: 5.514

6.  Application of a long short-term memory neural network: a burgeoning method of deep learning in forecasting HIV incidence in Guangxi, China.

Authors:  G Wang; W Wei; J Jiang; C Ning; H Chen; J Huang; B Liang; N Zang; Y Liao; R Chen; J Lai; O Zhou; J Han; H Liang; L Ye
Journal:  Epidemiol Infect       Date:  2019-01       Impact factor: 2.451

7.  Exploration in the Mechanism of Action of Licorice by Network Pharmacology.

Authors:  Meimei Chen; Jingru Zhu; Jie Kang; Xinmei Lai; Yuxing Gao; Huijuan Gan; Fafu Yang
Journal:  Molecules       Date:  2019-08-15       Impact factor: 4.411

8.  The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees.

Authors:  Erik Lampa; Lars Lind; P Monica Lind; Anna Bornefalk-Hermansson
Journal:  Environ Health       Date:  2014-07-04       Impact factor: 5.984

9.  Identfication of Potent LXRβ-Selective Agonists without LXRα Activation by In Silico Approaches.

Authors:  Meimei Chen; Fafu Yang; Jie Kang; Huijuan Gan; Xuemei Yang; Xinmei Lai; Yuxing Gao
Journal:  Molecules       Date:  2018-06-04       Impact factor: 4.411

  9 in total

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