| Literature DB >> 23761796 |
Katrin Peters1, Katharina Belt, Hans-Peter Braun.
Abstract
Complex I has a unique structure in plants and includes extra subunits. Here, we present a novel study to define its protein constituents. Mitochondria were isolated from Arabidopsis thaliana cell cultures, leaves, and roots. Subunits of complex I were resolved by 3D blue-native (BN)/SDS/SDS-PAGE and identified by mass spectrometry. Overall, 55 distinct proteins were found, seven of which occur in pairs of isoforms. We present evidence that Arabidopsis complex I consists of 49 distinct types of subunits, 40 of which represent homologs of bovine complex I. The nine other subunits represent special proteins absent in the animal linage of eukaryotes, most prominently a group of subunits related to bacterial gamma-type carbonic anhydrases. A GelMap http://www.gelmap.de/arabidopsis-3d-complex-i/ is presented for promoting future complex I research in Arabidopsis thaliana.Entities:
Keywords: BN/SDS/SDS-PAGE, Arabidopsis thaliana; NADH dehydrogenase; OXPHOS system; blue-native; mitochondria; respiratory chain
Year: 2013 PMID: 23761796 PMCID: PMC3671202 DOI: 10.3389/fpls.2013.00153
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Figure 1Investigation of complex I subunits from different tissues of . Total mitochondrial protein from cell culture, leaves, and roots (1200 μg each) was resolved by BN-PAGE in a first dimension. Complex I was cut out from the BN gel and used for second gel dimensions [SDS-PAGE within a 10% polyacrylamide (PAA) gel in the presence of 6 M urea]. Lanes from the second dimension gels were again cut out and transferred horizontally onto third gel dimensions (SDS-PAGE within a 16% PAA gel in the absence of urea). Gels were stained with Coomassie colloidal. (A) Complex I of cell cultures, (B) of leaves, (C) of roots. Molecular masses (in kilodaltons) are given to the left and on the top of the gels.
Figure 23D map of complex I from . Total mitochondrial protein (1200 μg each) was resolved by 3D BN/SDS/SDS-PAGE. (A) Coomassie-stained gel, (B) same gel as in (A) indicating protein spots which have been analyzed by mass spectrometry. Numbers correspond to those given in Table 1. Red arrows indicate the newly identified subunits B14.5a and B9. Molecular masses (in kilodaltons) are given to the left and on the top of the gels.
Complex I subunits in .
| Subunit | Accession | Spot | Organ | ||
|---|---|---|---|---|---|
| Plant subunit | Bovine homolog | Main spot | Further spots | ||
| 15 kDa-1 | 15 kDa | At3g62790 | 41 | c | |
| 15 kDa-2 | 15 kDa | At2g47690 | 41 | c | |
| AGGG | AGGG | At1g76200 | 47 | c | |
| ASHI | ASHI | At5g47570 | 44 | c | |
| B9 | B9 | At2g46540 | 50 | c | |
| B12-1 | B12 | At1g14450 | 45 | c, l | |
| B12-2 | B12 | At2g02510 | 45 | c, l | |
| B14 | B14 | At3g12260 | 36 | c | |
| B14.5b | B14.5b | At4g20150 | 47 | c, l | |
| B14.7 | B14.7 | At2g42210 | 33 | c, l | |
| B15 | B15 | At2g31490 | 46 | c, l | |
| B16.6-1 | B16.6 | At1g04630 | 34 | c, l | |
| B16.6-2 | B16.6 | At2g33220 | 34 | c | |
| B18 | B18 | At2g02050 | 38 | 37 | c, l, r |
| B22 | B22 | At4g34700 | 35 | c | |
| ESSS-1 | ESSS | At2g42310 | 42 | c | |
| ESSS-2 | ESSS | At3g57785 | 42 | c | |
| KFYI | KFYI | At4g00585 | 41 | 32 | c |
| MNLL | MNLL | At4g16450 | 40 | c, l, r | |
| MWFE | MWFE | At3g08610 | 49 | c, l | |
| ND1 | ND1 | AtMg00516/AtMg01120/AtMg01275 | 26 | c, l | |
| ND2 | ND2 | AtMg00285/AtMg01320 | 14 | c, l, r | |
| ND3 | ND3 | AtMg00990 | 43 | c | |
| ND4 | ND4 | AtMg00580 | 14 | c | |
| ND4L | ND4L | AtMg00650 | – | – | |
| ND5 | ND5 | AtMg00060/AtMg00513/AtMg00665 | 9 | 2 | c, l |
| ND6 | ND6 | AtMg00270 | 15 | c | |
| PDSW-2 | PDSW | At1g49140 | 36 | c, l, r | |
| PDSW-1 | PDSW | At3g18410 | 36 | c, l, r | |
| PGIV-1 | PGIV | At3g06310 | 37 | c | |
| PGIV-2 | PGIV | At5g18800 | 38 | 37 | c |
| GLDH | – | At3g47930 | 4 | c | |
| P1 | – | At1g67350 | 39 | c, l | |
| P2 | – | At2g27730 | 37 | c, l, r | |
| At1g18320 | – | At1g18320 | 29 | c | |
| CA1 | – | At1g19580 | 16 | 17, 18, 19, 20 | c, l |
| CA2 | – | At1g47260 | 16 | 13, 17, 18, 19, 20 | c, l |
| CA3 | – | At5g66510 | 21 | 19, 20 | c, l |
| CAL1 | – | At5g63510 | 23 | c, l | |
| CAL2 | – | At3g48680 | 23 | 22, 24 | c, l, r |
| 13 kDa | 13 kDa | At3g03070 | 44 | c | |
| 18 kDa | 18 kDa | At5g67590 | 33 | c, l | |
| 24 kDa | 24 kDa | At4g02580 | 21 | c, l, r | |
| 39 kDa | 39 kDa | At2g20360 | 11 | 12 | c, l, r |
| 51 kDa | 51 kDa | At5g08530 | 8 | 5, 6, 7, 9 | c, l |
| 75 kDa | 75 kDa | At5g37510 | 3 | 1, 2, 4 | c, l |
| B8 | B8 | At5g47890 | 42 | 41 | c, l |
| B13 | B13 | At5g52840 | 28 | 27, 29 | c, l, r |
| B14.5a | B14.5a | At5g08060 | 33 | c | |
| B17.2 | B17.2 | At3g03100 | 31 | c | |
| ND7 | 49 kDa | AtMg00510 | 10 | c, l | |
| ND9 | 30 kDa | AtMg00070 | 25 | c, l, r | |
| PSST | PSST | At5g11770 | 30 | c, l, r | |
| SGDH | SGDH | At1g67785 | 48 | c, l | |
| TYKY-1 | TYKY | At1g79010 | 22 | c, l | |
| TYKY-2 | TYKY | At1g16700 | 22 | c, l | |
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Candidates of additional complex I subunits in .
| Accession | Evidence | Remark |
|---|---|---|
| At5g14105 | Klodmann et al. ( | Subunit P3 |
| At1g68680 | Meyer et al. ( | |
| At3g10110 | Klodmann et al. ( | Similar to TIM22 |
| At1g72170 | Klodmann et al. ( | |
| At2g28430 | Klodmann et al. ( | |
| At1g72750 | Wang et al. ( | Similar to TIM23 |
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Figure 3GelMap of complex I as resolved by 3D BN/SDS/SDS-PAGE (. Upon hovering with the cursor over a spot, a tooltip including information on all included proteins is opened. In the example given on the figure, the indicated spot includes the CAL2 protein and two isoforms of the TYKY subunit. Upon clicking into the spot the protein names are converted into stable links which can be used to obtain further information. Protein information also can be obtained by clicking into the menu given to the right or by entering protein names or accessions into the search field below the menu.