Literature DB >> 23746446

The making of a slicer: activation of human Argonaute-1.

Christopher R Faehnle1, Elad Elkayam, Astrid D Haase, Gregory J Hannon, Leemor Joshua-Tor.   

Abstract

Argonautes are the central protein component in small RNA silencing pathways. Of the four human Argonautes (hAgo1-hAgo4) only hAgo2 is an active slicer. We determined the structure of hAgo1 bound to endogenous copurified RNAs to 1.75 Å resolution and hAgo1 loaded with let-7 microRNA to 2.1 Å. Both structures are strikingly similar to the structures of hAgo2. A conserved catalytic tetrad within the PIWI domain of hAgo2 is required for its slicing activity. Completion of the tetrad, combined with a mutation on a loop adjacent to the active site of hAgo1, results in slicer activity that is substantially enhanced by swapping in the N domain of hAgo2. hAgo3, with an intact tetrad, becomes an active slicer by swapping the N domain of hAgo2 without additional mutations. Intriguingly, the elements that make Argonaute an active slicer involve a sophisticated interplay between the active site and more distant regions of the enzyme.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23746446      PMCID: PMC3769929          DOI: 10.1016/j.celrep.2013.05.033

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  38 in total

1.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

Review 2.  Ancestral roles of small RNAs: an Ago-centric perspective.

Authors:  Leemor Joshua-Tor; Gregory J Hannon
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-10-01       Impact factor: 10.005

Review 3.  Perspective: machines for RNAi.

Authors:  Yukihide Tomari; Phillip D Zamore
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

4.  Crystal structure of the MID-PIWI lobe of a eukaryotic Argonaute protein.

Authors:  Andreas Boland; Eric Huntzinger; Steffen Schmidt; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

5.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

6.  RISC is a 5' phosphomonoester-producing RNA endonuclease.

Authors:  Javier Martinez; Thomas Tuschl
Journal:  Genes Dev       Date:  2004-04-22       Impact factor: 11.361

7.  Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex.

Authors:  Yanli Wang; Stefan Juranek; Haitao Li; Gang Sheng; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-12-18       Impact factor: 49.962

8.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

9.  Structure of yeast Argonaute with guide RNA.

Authors:  Kotaro Nakanishi; David E Weinberg; David P Bartel; Dinshaw J Patel
Journal:  Nature       Date:  2012-06-20       Impact factor: 49.962

10.  Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.

Authors:  Yanli Wang; Stefan Juranek; Haitao Li; Gang Sheng; Greg S Wardle; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

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  69 in total

1.  Biochemical isolation of Argonaute protein complexes by Ago-APP.

Authors:  Judith Hauptmann; Daniel Schraivogel; Astrid Bruckmann; Sudhir Manickavel; Leonhard Jakob; Norbert Eichner; Janina Pfaff; Marc Urban; Stefanie Sprunck; Markus Hafner; Thomas Tuschl; Rainer Deutzmann; Gunter Meister
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

Review 2.  Post-transcriptional gene silencing, transcriptional gene silencing and human immunodeficiency virus.

Authors:  Catalina Méndez; Chantelle L Ahlenstiel; Anthony D Kelleher
Journal:  World J Virol       Date:  2015-08-12

3.  Structural Basis for Target-Directed MicroRNA Degradation.

Authors:  Jessica Sheu-Gruttadauria; Paulina Pawlica; Shannon M Klum; Sonia Wang; Therese A Yario; Nicole T Schirle Oakdale; Joan A Steitz; Ian J MacRae
Journal:  Mol Cell       Date:  2019-07-25       Impact factor: 17.970

4.  Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters.

Authors:  Mi Seul Park; Raul Araya-Secchi; James A Brackbill; Hong-Duc Phan; Audrey C Kehling; Ekram W Abd El-Wahab; Daniel M Dayeh; Marcos Sotomayor; Kotaro Nakanishi
Journal:  Mol Cell       Date:  2019-07-16       Impact factor: 17.970

5.  miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5' terminus.

Authors:  Jasmin Chahal; Luca F R Gebert; Hin Hark Gan; Edna Camacho; Kristin C Gunsalus; Ian J MacRae; Selena M Sagan
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

Review 6.  Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.

Authors:  Stefanie Gerstberger; Markus Hafner; Manuel Ascano; Thomas Tuschl
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

7.  Inferring the evolutionary history of primate microRNA binding sites: overcoming motif counting biases.

Authors:  Alfred T Simkin; Jeffrey A Bailey; Fen-Biao Gao; Jeffrey D Jensen
Journal:  Mol Biol Evol       Date:  2014-04-09       Impact factor: 16.240

Review 8.  Structural Foundations of RNA Silencing by Argonaute.

Authors:  Jessica Sheu-Gruttadauria; Ian J MacRae
Journal:  J Mol Biol       Date:  2017-07-27       Impact factor: 5.469

9.  A Seed Mismatch Enhances Argonaute2-Catalyzed Cleavage and Partially Rescues Severely Impaired Cleavage Found in Fish.

Authors:  Grace R Chen; Hazel Sive; David P Bartel
Journal:  Mol Cell       Date:  2017-12-21       Impact factor: 17.970

10.  Structural and functional analyses reveal the contributions of the C- and N-lobes of Argonaute protein to selectivity of RNA target cleavage.

Authors:  Daniel M Dayeh; Bradley C Kruithoff; Kotaro Nakanishi
Journal:  J Biol Chem       Date:  2018-03-08       Impact factor: 5.157

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