Literature DB >> 23731861

Conformational dynamics and distribution of nitroxide spin labels.

Gunnar Jeschke1.   

Abstract

Long-range distance measurements based on paramagnetic relaxation enhancement (PRE) in NMR, quantification of surface water dynamics near biomacromolecules by Overhauser dynamic nuclear polarization (DNP) and sensitivity enhancement by solid-state DNP all depend on introducing paramagnetic species into an otherwise diamagnetic NMR sample. The species can be introduced by site-directed spin labeling, which offers precise control for positioning the label in the sequence of a biopolymer. However, internal flexibility of the spin label gives rise to dynamic processes that potentially influence PRE and DNP behavior and leads to a spatial distribution of the electron spin even in solid samples. Internal dynamics of spin labels and their static conformational distributions have been studied mainly by electron paramagnetic resonance spectroscopy and molecular dynamics simulations, with a large body of results for the most widely applied methanethiosulfonate spin label MTSL. These results are critically discussed in a unifying picture based on rotameric states of the group that carries the spin label. Deficiencies in our current understanding of dynamics and conformations of spin labeled groups and of their influence on NMR observables are highlighted and directions for further research suggested.
Copyright © 2013. Published by Elsevier B.V.

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Year:  2013        PMID: 23731861     DOI: 10.1016/j.pnmrs.2013.03.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  43 in total

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3.  Continuous wave W- and D-band EPR spectroscopy offer "sweet-spots" for characterizing conformational changes and dynamics in intrinsically disordered proteins.

Authors:  Thomas M Casey; Zhanglong Liu; Jackie M Esquiaqui; Natasha L Pirman; Eugene Milshteyn; Gail E Fanucci
Journal:  Biochem Biophys Res Commun       Date:  2014-06-17       Impact factor: 3.575

4.  Focus: Two-dimensional electron-electron double resonance and molecular motions: The challenge of higher frequencies.

Authors:  John M Franck; Siddarth Chandrasekaran; Boris Dzikovski; Curt R Dunnam; Jack H Freed
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

5.  Solution structure of discoidal high-density lipoprotein particles with a shortened apolipoprotein A-I.

Authors:  Stefan Bibow; Yevhen Polyhach; Cédric Eichmann; Celestine N Chi; Julia Kowal; Stefan Albiez; Robert A McLeod; Henning Stahlberg; Gunnar Jeschke; Peter Güntert; Roland Riek
Journal:  Nat Struct Mol Biol       Date:  2016-12-26       Impact factor: 15.369

6.  MMM: A toolbox for integrative structure modeling.

Authors:  Gunnar Jeschke
Journal:  Protein Sci       Date:  2017-09-04       Impact factor: 6.725

7.  The double-histidine Cu²⁺-binding motif: a highly rigid, site-specific spin probe for electron spin resonance distance measurements.

Authors:  Timothy F Cunningham; Miriam R Putterman; Astha Desai; W Seth Horne; Sunil Saxena
Journal:  Angew Chem Int Ed Engl       Date:  2015-03-27       Impact factor: 15.336

8.  Mechanism for the inhibition of the cAMP dependence of HCN ion channels by the auxiliary subunit TRIP8b.

Authors:  John R Bankston; Hannah A DeBerg; Stefan Stoll; William N Zagotta
Journal:  J Biol Chem       Date:  2017-09-01       Impact factor: 5.157

9.  Conformational Dynamics in Extended RGD-Containing Peptides.

Authors:  William R Lindemann; Alexander J Mijalis; José L Alonso; Peter P Borbat; Jack H Freed; M Amin Arnaout; Bradley L Pentelute; Julia H Ortony
Journal:  Biomacromolecules       Date:  2020-06-16       Impact factor: 6.988

Review 10.  High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Nathaniel V Nucci; Kathleen G Valentine; A Joshua Wand
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

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