Literature DB >> 23730145

Estimating Velocity for Processive Motor Proteins with Random Detachment.

John Hughes1, Shankar Shastry, William O Hancock, John Fricks.   

Abstract

We show that, for a wide range of models, the empirical velocity of processive motor proteins has a limiting Pearson type VII distribution with finite mean but infinite variance. We develop maximum likelihood inference for this Pearson type VII distribution. In two simulation studies, we compare the performance of our MLE with the performance of standard Student's t-based inference. The studies show that incorrectly assuming normality (1) can lead to imprecise inference regarding motor velocity in the one-sample case, and (2) can significantly reduce power in the two-sample case. These results should be of interest to experimentalists who wish to engineer motors possessing specific functional characteristics.

Entities:  

Keywords:  Bioengineering; Infinite variance; Maximum likelihood; Nanotechnology; Pearson type VII distribution; Random sums; Stopped Brownian motion

Year:  2013        PMID: 23730145      PMCID: PMC3666593          DOI: 10.1007/s13253-013-0131-4

Source DB:  PubMed          Journal:  J Agric Biol Environ Stat        ISSN: 1085-7117            Impact factor:   1.524


  16 in total

1.  Optical traps to study properties of molecular motors.

Authors:  James A Spudich; Sarah E Rice; Ronald S Rock; Thomas J Purcell; Hans M Warrick
Journal:  Cold Spring Harb Protoc       Date:  2011-11-01

2.  A three-domain structure of kinesin heavy chain revealed by DNA sequence and microtubule binding analyses.

Authors:  J T Yang; R A Laymon; L S Goldstein
Journal:  Cell       Date:  1989-03-10       Impact factor: 41.582

3.  A Brownian Dynamics model of kinesin in three dimensions incorporating the force-extension profile of the coiled-coil cargo tether.

Authors:  Paul J Atzberger; Charles S Peskin
Journal:  Bull Math Biol       Date:  2006-02-16       Impact factor: 1.758

4.  Neck linker length determines the degree of processivity in kinesin-1 and kinesin-2 motors.

Authors:  Shankar Shastry; William O Hancock
Journal:  Curr Biol       Date:  2010-05-13       Impact factor: 10.834

5.  Molecular motors one at a time: FIONA to the rescue.

Authors:  Comert Kural; Hamza Balci; Paul R Selvin
Journal:  J Phys Condens Matter       Date:  2005-11-04       Impact factor: 2.333

6.  Interhead tension determines processivity across diverse N-terminal kinesins.

Authors:  Shankar Shastry; William O Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-12       Impact factor: 11.205

7.  Kinesins with extended neck linkers: a chemomechanical model for variable-length stepping.

Authors:  John Hughes; William O Hancock; John Fricks
Journal:  Bull Math Biol       Date:  2011-10-14       Impact factor: 1.758

Review 8.  Molecular motors: a theorist's perspective.

Authors:  Anatoly B Kolomeisky; Michael E Fisher
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

Review 9.  Biochemical and molecular characterization of diseases linked to motor proteins.

Authors:  Nobutaka Hirokawa; Reiko Takemura
Journal:  Trends Biochem Sci       Date:  2003-10       Impact factor: 13.807

10.  Intramolecular strain coordinates kinesin stepping behavior along microtubules.

Authors:  Ahmet Yildiz; Michio Tomishige; Arne Gennerich; Ronald D Vale
Journal:  Cell       Date:  2008-09-19       Impact factor: 41.582

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  3 in total

1.  Effective behavior of cooperative and nonidentical molecular motors.

Authors:  Joseph J Klobusicky; John Fricks; Peter R Kramer
Journal:  Res Math Sci       Date:  2020-09-21

2.  Challenges in Estimating the Motility Parameters of Single Processive Motor Proteins.

Authors:  Felix Ruhnow; Linda Kloβ; Stefan Diez
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

3.  Interrogating Emergent Transport Properties for Molecular Motor Ensembles: A Semi-analytical Approach.

Authors:  Shreyas Bhaban; Donatello Materassi; Mingang Li; Thomas Hays; Murti Salapaka
Journal:  PLoS Comput Biol       Date:  2016-11-03       Impact factor: 4.475

  3 in total

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