| Literature DB >> 23728546 |
Nicholas J Martin1, Josephine Bunch, Helen J Cooper.
Abstract
Dried blood spots offer many advantages as a sample format including ease and safety of transport and handling. To date, the majority of mass spectrometry analyses of dried blood spots have focused on small molecules or hemoglobin. However, dried blood spots are a potentially rich source of protein biomarkers, an area that has been overlooked. To address this issue, we have applied an untargeted bottom-up proteomics approach to the analysis of dried blood spots. We present an automated and integrated method for extraction of endogenous proteins from the surface of dried blood spots and sample preparation via trypsin digestion by use of the Advion Biosciences Triversa Nanomate robotic platform. Liquid chromatography tandem mass spectrometry of the resulting digests enabled identification of 120 proteins from a single dried blood spot. The proteins identified cross a concentration range of four orders of magnitude. The method is evaluated and the results discussed in terms of the proteins identified and their potential use as biomarkers in screening programs.Entities:
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Year: 2013 PMID: 23728546 PMCID: PMC3713260 DOI: 10.1007/s13361-013-0658-1
Source DB: PubMed Journal: J Am Soc Mass Spectrom ISSN: 1044-0305 Impact factor: 3.109
Figure 1Summary of robotic workflow. (a) Starting position: DBS is mounted on the microtitre plate. One well contains extraction solvent and a second well contains trypsin solution; (b) 7 μL of 50 mMol NH4HCO3 is aspirated from solvent well; (c) 6 μL is dispensed onto DBS surface. Liquid microjunction is maintained between the pipette tip and the DBS surface (for 4 s) allowing intact proteins to dissolve into solvent; (d) solution of intact proteins (5 μL) is re-aspirated and dispensed into clean sample well; (e) 4.5 μL of 0.1 μg/μL trypsin solution is aspirated from trypsin well; (f) trypsin solution is added to sample well; (g) sample is incubated at 40 °C for 1 h. Enzyme digests intact proteins into peptides; (h) and (i) as solvent begins to evaporate from sample well, additional solvent (7.5 μL) is aspirated from solvent well and added to sample well [(h) and (i) are performed at 30 min and 1 h]. (j) Proteins are digested into peptides after 1 h. (k) Plate is transferred to HPLC autosampler and peptides are analyzed by LC MS/MS
Figure 2Reproducibility of identifications. Protein identifications from dried blood spots across the three replicates
Figure 3(a) CID MS/MS spectrum of peptide VGAHAGEYGAEALER in the +2 charge state, from alpha chain of hemoglobin, a very high abundance protein. (b) CID MS/MS spectrum of peptide LGVYELLLK in the +2 charge state, from inter alpha trypsin inhibitor H4, a medium abundance protein. (c) CID MS/MS spectrum of peptide ALYLQYTDETFR in the +2 charge state from cerruloplasmin, a medium abundance protein and biomarker of Wilson’s disease. (d) CID MS/MS spectrum of peptide NIETIINTFHQYSVK in the +2 charge state from protein S100 A9, a very low abundance protein
Proteins identified from LC MS/MS run of trypsin digestion of endogenous proteins sampled from surface of DBS
| Protein Description | Concentration in Plasma/μmol/L* | Protein Description | Concentration in Plasma/μmol/L * |
|---|---|---|---|
| Hemoglobin subunit beta | Ras-related protein Rab-14 | ||
| Hemoglobin subunit delta | Glutathione S-transferase A1 | ||
| Hemoglobin subunit gamma-1 | Ig alpha-1 chain C region | 8–50 | |
| Hemoglobin subunit alpha | Polyubiquitin-C | ||
| Protein S100-A9 | 0.05–0.14 | Serum amyloid A-4 protein | 4 |
| Apolipoprotein A-I | 30–70 | Alpha-synuclein | |
| Glyceraldehyde-3-phosphate-dehydrogenase | Thioredoxin | ||
| Ig kappa chain C region | 68–150 | Cofilin-1 | |
| Carbonic anhydrase 1 | Protein DJ-1 | ||
| Carbonic anhydrase 2 | Mucin-like protein 1 | ||
| Peroxiredoxin-6 | Complement C4-B | 0.5–2 | |
| Protein S100-A6 | Ig gamma-3 chain C region | 2–16 | |
| Keratin, type I cytoskeletal 10 | Alpha-1B-glycoprotein | 3–5 | |
| Complement C3 | 5–10 | Vitronectin | 1–3 |
| Serum paraoxonase/arylesterase 1 | Gelsolin | 3–5 | |
| Keratin, type II cytoskeletal 1 | Haptoglobin | 0–40 | |
| Apolipoprotein A-II | 30–60 | Keratin, type II cytoskeletal 5 | |
| Serum albumin | 500–800 | Lactotransferrin | |
| Ig gamma-1 chain C region | 68–150 | Semenogelin-2 | |
| Flavin reductase | Ig kappa chain V-I region Lay | 68–150 | |
| Keratin, type I cytoskeletal 9 | Trypsin-1 | ||
| Keratin, type II cytoskeletal 2 epidermal | Angiotensinogen | 1 | |
| Alpha-1-antitrypsin | 18–40 | Keratin, type II cytoskeletal 6A | |
| Keratin, type I cytoskeletal 13 | Heat shock protein beta-1 | ||
| Apolipoprotein C-III | 6–20 | Prothrombin | 1.5 |
| Dermcidin | Histidine-rich glycoprotein | 1-3 | |
| Protein S100-A8 | 0.05–0.14 | Apolipoprotein E | 0.6–2 |
| Inter-alpha-trypsin inhibitor heavy chain H4 | 2–4 | Ig lambda chain V-III region LOI | 36–48 |
| Bisphosphoglycerate mutase | Alpha-enolase | ||
| Peroxiredoxin-2 | Zinc-alpha-2-glycoprotein | 0.8–1.6 | |
| Actin, cytoplasmic 1 | Alpha-1-antichymotrypsin | 4–9 | |
| Histone H2A type 1-H | Apolipoprotein-L1 | 0.2 | |
| Inter-alpha-trypsin inhibitor heavy chain H2 | 2–3 | Kininogen-1 | 3 |
| Ceruloplasmin | 2–5 | Adenylate kinase isoenzyme 1 | |
| Apolipoprotein C-II | 2–7 | Fibrinogen alpha chain | 10–27 |
| Vitamin D-binding protein | Delta-aminolevulinic acid dehydratase | ||
| Nucleoside diphosphate kinase A | Alpha-2-HS-glycoprotein | 9-30 | |
| Serotransferrin | 25–45 | Plasma protease C1 inhibitor | |
| Complement factor B | Ig gamma-2 chain C region | 20–90 | |
| Ig kappa chain V-III region SIE | 68–150 | Arginase-1 | |
| Alpha-1-acid glycoprotein 1 | 9–20 | Zymogen granule protein 16 homolog B | |
| Keratin, type II cytoskeletal 2 oral | Complement factor H | 2–5 | |
| GTP-binding nuclear protein Ran | Rab GDP dissociation inhibitor beta | ||
| Hemopexin | 9–20 | Heat shock-related 70 kDa protein 2 | |
| Catalase | 14-3-3 protein theta | ||
| Apolipoprotein A-IV | 3–6 | Plasminogen | 2–4 |
| Clusterin N] | 1–2 | Fibroblast growth factor 2 | |
| Alpha-2-macroglobulin | 7–17 | Liver carboxylesterase 1 | |
| Fibrinogen beta chain | 10–27 | Heparin cofactor 2 | 1.5 |
| Lysozyme C | 0.01–1 | Serpin B3 | |
| Ig lambda-7 chain C region | 68–150 | Protein disulfide-isomerase A2 | |
| Peroxiredoxin-1 | Zinc finger protein 611 | ||
| Fibrinogen gamma chain | 9–24 | Apolipoprotein B-100 | 1–3 |
| Semenogelin-1 | Phosphoglycerate kinase 1 | ||
| Peptidyl-prolyl cis-trans isomerase A | Retinal dehydrogenase 1 | ||
| Apolipoprotein C-I | 6–12 | Lumican | |
| Purine nucleoside phosphorylase | Complement C1s subcomponent | 1 | |
| Keratin, type I cytoskeletal 14 | Plasma kallikrein | ||
| Inter-alpha-trypsin inhibitor heavy chain H1 | 2–4 | Ig mu heavy chain disease protein | 4–25 |
| Fructose-bisphosphate aldolase A | Complement component C9 | 0.4–1 |
*Reference concentrations of named protein in healthy human plasma [27]
Figure 4Categories of proteins identified