Literature DB >> 23723926

An unknown solvate of 1-(2,4-di-chloro-benz-yl)-4-[(4-methyl-phen-yl)sulfon-yl]piperazine.

S Sreenivasa1, K E Manojkumar, H C Anitha, P A Suchetan, B S Palakshamurthy, Yenagi Jayashree, J Tonannavar.   

Abstract

In the title compound, C18H20Cl2N2O2S, the piperazine ring adopts a chair conformation. The dihedral angle between the sulfonyl-bound benzene ring and the best-fit plane through the six non-H atoms of the piperazine ring is 72.22 (12)°; those between the di-chloro-benzene ring and the sulfonyl and piperazine rings are 2.44 (13) and 74.16 (2)°, respectively. In the crystal, mol-ecules are connected through weak C-H⋯O inter-actions into a hexa-meric unit generating a R 6 (6)(60) motif in the ab plane. The mol-ecules are also connected into C(4) chains through weak C-H⋯N inter-actions. The solvent used to grow the crystal was a mixture of di-chloro-methane and methanol, but the resulting electron density was uninter-pretable. The solvent contribution to the scattering was removed with the SQUEEZE routine in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155]. The formula mass and unit-cell characteristics do not take into account the disordered solvent.

Entities:  

Year:  2013        PMID: 23723926      PMCID: PMC3648306          DOI: 10.1107/S160053681301012X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures, see: Sreenivasa et al. (2013a ▶,b ▶).

Experimental

Crystal data

C18H20Cl2N2O2S M = 399.32 Trigonal, a = 28.2896 (5) Å c = 13.3041 (3) Å V = 9220.8 (3) Å3 Z = 18 Mo Kα radiation μ = 0.43 mm−1 T = 296 K 0.31 × 0.23 × 0.19 mm

Data collection

Bruker APEXII diffractometer 15194 measured reflections 3596 independent reflections 2637 reflections with I > 2σ(I) R int = 0.033 3608 standard reflections every 22 reflections intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.109 S = 0.95 3596 reflections 227 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301012X/tk5213sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301012X/tk5213Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301012X/tk5213Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20Cl2N2O2SDx = 1.294 Mg m3
Mr = 399.32Melting point: 423 K
Trigonal, R3Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3Cell parameters from 2637 reflections
a = 28.2896 (5) Åθ = 2.5–25°
c = 13.3041 (3) ŵ = 0.43 mm1
V = 9220.8 (3) Å3T = 296 K
Z = 18Prism, colourless
F(000) = 37440.31 × 0.23 × 0.19 mm
Prism
Bruker APEXII diffractometerRint = 0.033
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.5°
Graphite monochromatorh = −31→33
phi and ω scansk = −29→28
15194 measured reflectionsl = −15→15
3596 independent reflections3608 standard reflections every 22 reflections
2637 reflections with I > 2σ(I) intensity decay: 1.0%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0587P)2 + 6.8101P] where P = (Fo2 + 2Fc2)/3
3596 reflections(Δ/σ)max = 0.089
227 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.25 e Å3
0 constraints
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.64880 (8)0.09435 (8)0.76974 (16)0.0464 (5)
O20.62445 (6)−0.00584 (6)0.79558 (13)0.0674 (5)
N20.44379 (7)−0.01492 (7)0.71771 (13)0.0488 (4)
C20.65949 (9)0.14258 (9)0.81461 (18)0.0567 (6)
H20.64520.14230.87770.068*
N10.54532 (7)0.00797 (7)0.79761 (12)0.0458 (4)
C30.69137 (10)0.19115 (10)0.7653 (2)0.0654 (7)
H30.69840.22360.79590.079*
C40.71321 (9)0.19286 (10)0.67143 (19)0.0595 (6)
C50.70225 (9)0.14399 (11)0.62852 (19)0.0624 (6)
H50.71680.14420.56570.075*
C60.67040 (9)0.09499 (10)0.67628 (17)0.0563 (6)
H60.66340.06250.64590.068*
O10.61109 (6)0.04263 (7)0.93700 (12)0.0678 (5)
C70.74895 (12)0.24614 (12)0.6180 (2)0.0928 (9)
H7A0.78570.25270.61490.139*
H7B0.74850.27530.65410.139*
H7C0.73550.24430.55110.139*
C80.51725 (8)0.03596 (9)0.83632 (18)0.0530 (6)
H8A0.52930.06980.80010.064*
H8B0.52580.04450.90690.064*
C90.45666 (9)−0.00078 (9)0.82310 (16)0.0531 (6)
H9A0.4444−0.03370.86240.064*
H9B0.43770.01760.84710.064*
C100.47094 (8)−0.04358 (9)0.68121 (17)0.0522 (5)
H10A0.4615−0.05350.61130.063*
H10B0.4588−0.07690.71960.063*
C110.53211 (8)−0.00766 (9)0.69135 (16)0.0538 (6)
H11A0.5502−0.02720.66880.065*
H11B0.54470.02470.65010.065*
C120.38530 (9)−0.04161 (9)0.69488 (18)0.0571 (6)
H12A0.3804−0.05050.62390.068*
H12B0.3731−0.01560.70690.068*
C130.34892 (8)−0.09302 (9)0.75381 (16)0.0475 (5)
C140.33447 (8)−0.14556 (9)0.72265 (16)0.0492 (5)
C150.30393 (8)−0.19090 (9)0.78093 (17)0.0545 (6)
H150.2957−0.22530.75860.065*
C160.28575 (9)−0.18448 (9)0.87298 (17)0.0556 (6)
C170.29689 (9)−0.13381 (10)0.90606 (18)0.0600 (6)
H170.2837−0.12980.96760.072*
C180.32797 (9)−0.08920 (10)0.84600 (18)0.0565 (6)
H180.3353−0.05500.86810.068*
S10.60861 (2)0.03176 (2)0.83193 (4)0.05200 (18)
Cl10.35347 (3)−0.15637 (3)0.60399 (5)0.0748 (2)
Cl20.24812 (3)−0.24131 (3)0.94814 (6)0.0875 (3)
U11U22U33U12U13U23
C10.0379 (11)0.0542 (13)0.0499 (12)0.0250 (10)−0.0040 (9)−0.0026 (10)
O20.0607 (10)0.0627 (10)0.0950 (13)0.0431 (9)−0.0010 (9)0.0009 (9)
N20.0427 (10)0.0504 (10)0.0573 (11)0.0264 (9)−0.0001 (8)0.0044 (8)
C20.0525 (14)0.0616 (15)0.0552 (14)0.0278 (12)0.0022 (11)−0.0055 (12)
N10.0436 (10)0.0480 (10)0.0497 (10)0.0258 (8)−0.0012 (8)−0.0079 (8)
C30.0589 (15)0.0552 (15)0.0773 (18)0.0248 (12)−0.0085 (13)−0.0102 (13)
C40.0424 (13)0.0638 (16)0.0652 (16)0.0213 (12)−0.0084 (11)0.0070 (12)
C50.0506 (14)0.0795 (18)0.0567 (15)0.0321 (13)0.0024 (11)0.0042 (13)
C60.0487 (13)0.0640 (15)0.0590 (14)0.0303 (12)−0.0012 (11)−0.0053 (12)
O10.0661 (11)0.0780 (11)0.0511 (10)0.0297 (9)−0.0086 (8)0.0039 (8)
C70.080 (2)0.078 (2)0.096 (2)0.0213 (16)−0.0027 (17)0.0193 (17)
C80.0502 (13)0.0524 (13)0.0600 (14)0.0282 (11)0.0020 (10)−0.0105 (10)
C90.0504 (13)0.0571 (14)0.0604 (14)0.0334 (11)0.0053 (11)−0.0067 (11)
C100.0494 (13)0.0582 (13)0.0500 (13)0.0278 (11)−0.0022 (10)−0.0078 (10)
C110.0476 (13)0.0632 (14)0.0524 (13)0.0290 (11)0.0029 (10)−0.0101 (11)
C120.0515 (13)0.0636 (15)0.0633 (15)0.0341 (12)−0.0051 (11)0.0081 (11)
C130.0352 (11)0.0572 (13)0.0537 (13)0.0259 (10)−0.0056 (9)−0.0021 (10)
C140.0367 (11)0.0631 (14)0.0469 (12)0.0242 (11)−0.0057 (9)−0.0107 (10)
C150.0463 (12)0.0504 (13)0.0595 (14)0.0186 (11)−0.0053 (10)−0.0138 (11)
C160.0415 (12)0.0544 (14)0.0569 (14)0.0133 (11)−0.0004 (10)−0.0044 (11)
C170.0506 (13)0.0647 (15)0.0569 (14)0.0230 (12)0.0089 (11)−0.0115 (12)
C180.0464 (13)0.0557 (14)0.0701 (16)0.0276 (11)0.0028 (11)−0.0116 (12)
S10.0478 (3)0.0554 (4)0.0567 (4)0.0288 (3)−0.0042 (2)0.0013 (3)
Cl10.0692 (4)0.0910 (5)0.0524 (4)0.0312 (4)0.0014 (3)−0.0202 (3)
Cl20.0864 (5)0.0670 (4)0.0774 (5)0.0146 (4)0.0190 (4)0.0064 (3)
C1—C21.377 (3)C8—H8A0.9700
C1—C61.382 (3)C8—H8B0.9700
C1—S11.760 (2)C9—H9A0.9700
O2—S11.4294 (16)C9—H9B0.9700
N2—C91.454 (3)C10—C111.512 (3)
N2—C101.451 (3)C10—H10A0.9700
N2—C121.467 (3)C10—H10B0.9700
C2—C31.375 (3)C11—H11A0.9700
C2—H20.9300C11—H11B0.9700
N1—C81.467 (2)C12—C131.514 (3)
N1—C111.473 (3)C12—H12A0.9700
N1—S11.6317 (17)C12—H12B0.9700
C3—C41.384 (3)C13—C181.390 (3)
C3—H30.9300C13—C141.393 (3)
C4—C51.380 (3)C14—C151.373 (3)
C4—C71.508 (3)C14—Cl11.743 (2)
C5—C61.374 (3)C15—C161.375 (3)
C5—H50.9300C15—H150.9300
C6—H60.9300C16—C171.377 (3)
O1—S11.4255 (17)C16—Cl21.734 (2)
C7—H7A0.9600C17—C181.376 (3)
C7—H7B0.9600C17—H170.9300
C7—H7C0.9600C18—H180.9300
C8—C91.506 (3)
C2—C1—C6120.0 (2)N2—C10—C11110.00 (17)
C2—C1—S1120.28 (17)N2—C10—H10A109.7
C6—C1—S1119.69 (17)C11—C10—H10A109.7
C9—N2—C10110.30 (16)N2—C10—H10B109.7
C9—N2—C12113.84 (17)C11—C10—H10B109.7
C10—N2—C12114.78 (17)H10A—C10—H10B108.2
C3—C2—C1119.5 (2)N1—C11—C10108.70 (17)
C3—C2—H2120.2N1—C11—H11A109.9
C1—C2—H2120.2C10—C11—H11A109.9
C8—N1—C11112.00 (16)N1—C11—H11B110.0
C8—N1—S1117.23 (13)C10—C11—H11B110.0
C11—N1—S1116.99 (13)H11A—C11—H11B108.3
C2—C3—C4121.6 (2)N2—C12—C13115.93 (17)
C2—C3—H3119.2N2—C12—H12A108.3
C4—C3—H3119.2C13—C12—H12A108.3
C5—C4—C3117.7 (2)N2—C12—H12B108.3
C5—C4—C7120.6 (2)C13—C12—H12B108.3
C3—C4—C7121.7 (3)H12A—C12—H12B107.4
C6—C5—C4121.7 (2)C18—C13—C14115.9 (2)
C6—C5—H5119.2C18—C13—C12119.6 (2)
C4—C5—H5119.2C14—C13—C12124.5 (2)
C5—C6—C1119.5 (2)C15—C14—C13122.7 (2)
C5—C6—H6120.3C15—C14—Cl1116.92 (17)
C1—C6—H6120.3C13—C14—Cl1120.33 (17)
C4—C7—H7A109.5C14—C15—C16118.8 (2)
C4—C7—H7B109.5C14—C15—H15120.6
H7A—C7—H7B109.5C16—C15—H15120.6
C4—C7—H7C109.5C15—C16—C17121.1 (2)
H7A—C7—H7C109.5C15—C16—Cl2119.20 (18)
H7B—C7—H7C109.5C17—C16—Cl2119.73 (18)
N1—C8—C9108.85 (16)C18—C17—C16118.5 (2)
N1—C8—H8A109.9C18—C17—H17120.7
C9—C8—H8A109.9C16—C17—H17120.7
N1—C8—H8B109.9C17—C18—C13122.9 (2)
C9—C8—H8B109.9C17—C18—H18118.6
H8A—C8—H8B108.3C13—C18—H18118.6
N2—C9—C8110.16 (17)O1—S1—O2119.49 (10)
N2—C9—H9A109.6O1—S1—N1106.79 (9)
C8—C9—H9A109.6O2—S1—N1106.62 (9)
N2—C9—H9B109.6O1—S1—C1107.86 (10)
C8—C9—H9B109.6O2—S1—C1107.72 (10)
H9A—C9—H9B108.1N1—S1—C1107.89 (9)
C6—C1—C2—C30.5 (3)C12—C13—C14—C15176.15 (19)
S1—C1—C2—C3179.42 (17)C18—C13—C14—Cl1174.77 (15)
C1—C2—C3—C4−0.1 (3)C12—C13—C14—Cl1−5.6 (3)
C2—C3—C4—C5−0.4 (3)C13—C14—C15—C161.5 (3)
C2—C3—C4—C7−179.0 (2)Cl1—C14—C15—C16−176.77 (17)
C3—C4—C5—C60.6 (3)C14—C15—C16—C171.2 (3)
C7—C4—C5—C6179.1 (2)C14—C15—C16—Cl2−178.92 (16)
C4—C5—C6—C1−0.2 (3)C15—C16—C17—C18−1.7 (4)
C2—C1—C6—C5−0.3 (3)Cl2—C16—C17—C18178.44 (18)
S1—C1—C6—C5−179.28 (17)C16—C17—C18—C13−0.5 (3)
C11—N1—C8—C957.6 (2)C14—C13—C18—C172.9 (3)
S1—N1—C8—C9−163.12 (15)C12—C13—C18—C17−176.7 (2)
C10—N2—C9—C860.6 (2)C8—N1—S1—O144.09 (18)
C12—N2—C9—C8−168.74 (17)C11—N1—S1—O1−178.60 (15)
N1—C8—C9—N2−58.1 (2)C8—N1—S1—O2172.90 (15)
C9—N2—C10—C11−60.5 (2)C11—N1—S1—O2−49.80 (17)
C12—N2—C10—C11169.35 (18)C8—N1—S1—C1−71.63 (17)
C8—N1—C11—C10−57.5 (2)C11—N1—S1—C165.67 (17)
S1—N1—C11—C10163.11 (15)C2—C1—S1—O1−23.1 (2)
N2—C10—C11—N157.9 (2)C6—C1—S1—O1155.79 (17)
C9—N2—C12—C13−56.4 (2)C2—C1—S1—O2−153.37 (17)
C10—N2—C12—C1372.1 (2)C6—C1—S1—O225.6 (2)
N2—C12—C13—C1888.3 (2)C2—C1—S1—N191.89 (18)
N2—C12—C13—C14−91.3 (3)C6—C1—S1—N1−89.19 (18)
C18—C13—C14—C15−3.4 (3)
D—H···AD—HH···AD···AD—H···A
C18—H18···O2i0.932.703.575 (3)157
C17—H17···N2ii0.932.703.485 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18⋯O2i 0.932.703.575 (3)157
C17—H17⋯N2ii 0.932.703.485 (3)143

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Tosyl-4-[2-(trifluoro-meth-yl)benz-yl]piperazine.

Authors:  S Sreenivasa; H C Anitha; K E Manojkumar; J Tonannavar; Yenagi Jayashree; P A Suchetan; B S Palakshamurthy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-16

3.  (2,3-Difluoro-phen-yl)(4-tosyl-piperazin-1-yl)methanone.

Authors:  S Sreenivasa; K E Manojkumar; P A Suchetan; J Tonannavar; Yashshwita Chavan; B S Palakshamurthy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  1-(3,4-Di-fluoro-benz-yl)-4-(4-methyl-phenyl-sulfon-yl)piperazine.

Authors:  S Sreenivasa; H C Anitha; P A Suchetan; B S Palakshamurthy; J Savanur; J Tonannavar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  1 in total

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