Literature DB >> 23424470

(2,3-Difluoro-phen-yl)(4-tosyl-piperazin-1-yl)methanone.

S Sreenivasa1, K E Manojkumar, P A Suchetan, J Tonannavar, Yashshwita Chavan, B S Palakshamurthy.   

Abstract

In the title compound, C(18)H(18)F(2)N(2)O(3)S, the piperazine ring adopts a chair conformation. The dihedral angle between the sulfonyl-bound benzene ring and the best fit plane throught the six non-H atoms of the piperazine ring is 69.4 (2)°, while those between the fluoro-benzene and sulfonyl rings and the fluoro-benzene and piperazine rings are 30.97 (2) and 75.98 (2)°, respectively. In the crystal, mol-ecules are connected to form a tetra-meric unit through C-H⋯O hydrogen bonds. The structure is further stabilized by weak inter-molecular C-H⋯F inter-actions, generating C(8) and C(7) chains running along [100].

Entities:  

Year:  2013        PMID: 23424470      PMCID: PMC3569247          DOI: 10.1107/S1600536812051690

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, characterization and biological activity of piperazine and its derivatives, see: Gan et al. (2009a ▶,b ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H18F2N2O3S M = 380.40 Monoclinic, a = 17.0456 (4) Å b = 7.6026 (1) Å c = 15.5113 (3) Å β = 113.513 (1)° V = 1843.22 (6) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 298 K 0.28 × 0.26 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.942, T max = 0.958 11988 measured reflections 2359 independent reflections 1930 reflections with I > 2σ(I) R int = 0.023 θmax = 22.4°

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.092 S = 1.06 2359 reflections 236 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus and XPREP (Bruker,2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051690/sj5290sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051690/sj5290Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051690/sj5290Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18F2N2O3SPrism
Mr = 380.40Dx = 1.371 Mg m3
Monoclinic, P21/cMelting point: 457 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 17.0456 (4) ÅCell parameters from 2364 reflections
b = 7.6026 (1) Åθ = 2.6–22.4°
c = 15.5113 (3) ŵ = 0.22 mm1
β = 113.513 (1)°T = 298 K
V = 1843.22 (6) Å3Prism, colourless
Z = 40.28 × 0.26 × 0.20 mm
F(000) = 792
Bruker APEXII CCD diffractometer2359 independent reflections
Radiation source: fine-focus sealed tube1930 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 0.95 pixels mm-1θmax = 22.4°, θmin = 2.6°
φ and ω scansh = −18→15
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −8→7
Tmin = 0.942, Tmax = 0.958l = −16→16
11988 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0494P)2 + 0.3661P] where P = (Fo2 + 2Fc2)/3
2359 reflections(Δ/σ)max = 0.001
236 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.23 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.56842 (15)0.1855 (3)−0.19563 (16)0.0606 (6)
C20.50273 (17)0.2154 (3)−0.28076 (15)0.0652 (6)
C30.42103 (17)0.2278 (3)−0.28889 (17)0.0712 (7)
H30.37670.2486−0.34700.085*
C40.40468 (16)0.2091 (3)−0.20946 (19)0.0788 (7)
H40.34880.2165−0.21370.095*
C50.47062 (17)0.1794 (3)−0.12370 (17)0.0710 (7)
H50.45870.1672−0.07050.085*
C60.55410 (14)0.1675 (3)−0.11526 (14)0.0542 (6)
C70.62575 (15)0.1198 (3)−0.02411 (15)0.0599 (6)
C80.71988 (15)0.1996 (3)0.13429 (14)0.0644 (6)
H8A0.73690.07770.13530.077*
H8B0.69440.21350.17970.077*
C90.79693 (15)0.3155 (3)0.16094 (15)0.0632 (6)
H9A0.83640.29010.22490.076*
H9B0.82600.29350.11950.076*
C100.71040 (13)0.5453 (3)0.05710 (14)0.0574 (6)
H10A0.73820.52780.01410.069*
H10B0.69380.66790.05420.069*
C110.63270 (14)0.4302 (3)0.02931 (15)0.0598 (6)
H11A0.60150.45800.06790.072*
H11B0.59540.4525−0.03580.072*
C120.91357 (14)0.6645 (3)0.15849 (14)0.0584 (6)
C130.98919 (15)0.5691 (3)0.19152 (16)0.0659 (6)
H131.00220.49510.24310.079*
C141.04489 (16)0.5843 (3)0.14784 (19)0.0746 (7)
H141.09520.51910.17020.089*
C151.02791 (17)0.6943 (3)0.07146 (18)0.0730 (7)
C160.95135 (18)0.7848 (3)0.03828 (17)0.0742 (7)
H160.93790.8565−0.01430.089*
C170.89459 (16)0.7722 (3)0.08056 (16)0.0659 (6)
H170.84370.83540.05710.079*
C181.0916 (2)0.7155 (4)0.0280 (2)0.1021 (10)
H18A1.06340.7612−0.03460.153*
H18B1.11650.60340.02560.153*
H18C1.13570.79560.06510.153*
N10.65731 (11)0.2441 (2)0.04104 (11)0.0572 (5)
N20.76965 (11)0.5003 (2)0.15333 (11)0.0571 (5)
O10.65057 (13)−0.0330 (2)−0.01083 (11)0.0937 (6)
O20.88639 (11)0.5727 (2)0.30408 (10)0.0772 (5)
O30.79753 (10)0.8085 (2)0.20235 (11)0.0740 (5)
F10.64895 (9)0.1741 (2)−0.19068 (10)0.0971 (5)
F20.52079 (11)0.2303 (2)−0.35774 (10)0.1029 (6)
S10.84155 (4)0.64492 (7)0.21283 (4)0.0619 (2)
U11U22U33U12U13U23
C10.0636 (15)0.0573 (14)0.0623 (15)0.0075 (12)0.0267 (13)0.0050 (11)
C20.0869 (18)0.0589 (15)0.0500 (14)0.0087 (13)0.0274 (14)0.0016 (10)
C30.0761 (18)0.0625 (16)0.0607 (15)0.0060 (13)0.0122 (13)−0.0038 (11)
C40.0635 (16)0.0821 (19)0.087 (2)0.0011 (14)0.0268 (16)−0.0009 (14)
C50.0809 (18)0.0705 (16)0.0687 (16)0.0017 (14)0.0372 (15)0.0020 (12)
C60.0702 (15)0.0380 (12)0.0526 (13)0.0016 (10)0.0226 (11)−0.0001 (9)
C70.0803 (16)0.0451 (15)0.0530 (13)0.0055 (12)0.0252 (12)0.0038 (11)
C80.0877 (17)0.0441 (13)0.0535 (13)0.0094 (12)0.0198 (12)0.0069 (10)
C90.0733 (15)0.0474 (14)0.0556 (13)0.0164 (12)0.0117 (12)0.0094 (10)
C100.0643 (14)0.0413 (13)0.0549 (13)0.0079 (11)0.0115 (11)0.0077 (9)
C110.0672 (14)0.0435 (13)0.0596 (13)0.0097 (11)0.0158 (11)0.0037 (10)
C120.0631 (14)0.0409 (12)0.0522 (12)−0.0002 (11)0.0031 (11)−0.0037 (10)
C130.0656 (15)0.0497 (14)0.0621 (14)0.0027 (12)0.0040 (13)−0.0012 (11)
C140.0597 (15)0.0575 (16)0.0884 (18)0.0001 (13)0.0105 (14)−0.0153 (14)
C150.0815 (18)0.0529 (15)0.0763 (17)−0.0159 (14)0.0227 (15)−0.0202 (13)
C160.0898 (19)0.0559 (16)0.0635 (15)−0.0092 (14)0.0163 (15)−0.0017 (12)
C170.0702 (15)0.0513 (15)0.0592 (14)0.0028 (12)0.0079 (13)0.0031 (11)
C180.109 (2)0.089 (2)0.120 (2)−0.0272 (18)0.058 (2)−0.0307 (18)
N10.0741 (12)0.0373 (11)0.0504 (10)0.0061 (9)0.0144 (9)0.0024 (8)
N20.0660 (11)0.0395 (10)0.0518 (10)0.0089 (9)0.0089 (9)0.0057 (8)
O10.1381 (16)0.0460 (11)0.0679 (10)0.0203 (10)0.0104 (10)−0.0024 (8)
O20.0933 (12)0.0732 (11)0.0470 (8)0.0107 (9)0.0088 (8)0.0031 (7)
O30.0833 (11)0.0487 (9)0.0760 (10)0.0128 (8)0.0169 (9)−0.0088 (7)
F10.0793 (10)0.1325 (14)0.0878 (10)0.0192 (9)0.0422 (8)0.0291 (9)
F20.1248 (13)0.1301 (14)0.0601 (9)0.0342 (11)0.0437 (9)0.0201 (8)
S10.0722 (4)0.0485 (4)0.0499 (3)0.0083 (3)0.0084 (3)−0.0018 (2)
C1—F11.347 (2)C10—H10A0.9700
C1—C21.367 (3)C10—H10B0.9700
C1—C61.369 (3)C11—N11.466 (3)
C2—C31.351 (3)C11—H11A0.9700
C2—F21.352 (3)C11—H11B0.9700
C3—C41.375 (3)C12—C131.387 (3)
C3—H30.9300C12—C171.387 (3)
C4—C51.375 (3)C12—S11.751 (2)
C4—H40.9300C13—C141.374 (3)
C5—C61.379 (3)C13—H130.9300
C5—H50.9300C14—C151.383 (4)
C6—C71.498 (3)C14—H140.9300
C7—O11.225 (3)C15—C161.380 (4)
C7—N11.330 (3)C15—C181.497 (4)
C8—N11.454 (3)C16—C171.372 (3)
C8—C91.496 (3)C16—H160.9300
C8—H8A0.9700C17—H170.9300
C8—H8B0.9700C18—H18A0.9600
C9—N21.470 (3)C18—H18B0.9600
C9—H9A0.9700C18—H18C0.9600
C9—H9B0.9700N2—S11.6311 (17)
C10—N21.470 (2)O2—S11.4234 (15)
C10—C111.500 (3)O3—S11.4281 (16)
F1—C1—C2119.3 (2)C10—C11—H11A109.5
F1—C1—C6119.3 (2)N1—C11—H11B109.5
C2—C1—C6121.4 (2)C10—C11—H11B109.5
C3—C2—F2120.1 (2)H11A—C11—H11B108.1
C3—C2—C1121.2 (2)C13—C12—C17119.3 (2)
F2—C2—C1118.7 (2)C13—C12—S1120.31 (18)
C2—C3—C4118.6 (2)C17—C12—S1120.34 (18)
C2—C3—H3120.7C14—C13—C12119.8 (2)
C4—C3—H3120.7C14—C13—H13120.1
C3—C4—C5120.3 (2)C12—C13—H13120.1
C3—C4—H4119.9C13—C14—C15121.6 (2)
C5—C4—H4119.9C13—C14—H14119.2
C4—C5—C6121.1 (2)C15—C14—H14119.2
C4—C5—H5119.4C16—C15—C14117.7 (3)
C6—C5—H5119.4C16—C15—C18121.7 (3)
C1—C6—C5117.3 (2)C14—C15—C18120.6 (3)
C1—C6—C7120.6 (2)C17—C16—C15121.9 (2)
C5—C6—C7121.8 (2)C17—C16—H16119.0
O1—C7—N1122.5 (2)C15—C16—H16119.0
O1—C7—C6119.0 (2)C16—C17—C12119.6 (2)
N1—C7—C6118.36 (19)C16—C17—H17120.2
N1—C8—C9110.67 (17)C12—C17—H17120.2
N1—C8—H8A109.5C15—C18—H18A109.5
C9—C8—H8A109.5C15—C18—H18B109.5
N1—C8—H8B109.5H18A—C18—H18B109.5
C9—C8—H8B109.5C15—C18—H18C109.5
H8A—C8—H8B108.1H18A—C18—H18C109.5
N2—C9—C8109.02 (18)H18B—C18—H18C109.5
N2—C9—H9A109.9C7—N1—C8120.31 (17)
C8—C9—H9A109.9C7—N1—C11125.61 (17)
N2—C9—H9B109.9C8—N1—C11114.06 (16)
C8—C9—H9B109.9C9—N2—C10111.79 (16)
H9A—C9—H9B108.3C9—N2—S1117.19 (14)
N2—C10—C11109.02 (16)C10—N2—S1118.30 (13)
N2—C10—H10A109.9O2—S1—O3119.91 (10)
C11—C10—H10A109.9O2—S1—N2106.66 (9)
N2—C10—H10B109.9O3—S1—N2106.31 (9)
C11—C10—H10B109.9O2—S1—C12108.06 (10)
H10A—C10—H10B108.3O3—S1—C12107.97 (10)
N1—C11—C10110.57 (17)N2—S1—C12107.32 (9)
N1—C11—H11A109.5
F1—C1—C2—C3180.0 (2)C15—C16—C17—C12−0.6 (3)
C6—C1—C2—C3−0.2 (4)C13—C12—C17—C16−1.0 (3)
F1—C1—C2—F20.8 (3)S1—C12—C17—C16−179.41 (17)
C6—C1—C2—F2−179.4 (2)O1—C7—N1—C8−4.0 (3)
F2—C2—C3—C4178.9 (2)C6—C7—N1—C8172.92 (19)
C1—C2—C3—C4−0.2 (4)O1—C7—N1—C11178.1 (2)
C2—C3—C4—C50.4 (4)C6—C7—N1—C11−5.1 (3)
C3—C4—C5—C6−0.1 (4)C9—C8—N1—C7127.7 (2)
F1—C1—C6—C5−179.7 (2)C9—C8—N1—C11−54.1 (3)
C2—C1—C6—C50.5 (3)C10—C11—N1—C7−128.3 (2)
F1—C1—C6—C7−5.4 (3)C10—C11—N1—C853.6 (2)
C2—C1—C6—C7174.8 (2)C8—C9—N2—C10−60.2 (2)
C4—C5—C6—C1−0.3 (3)C8—C9—N2—S1158.59 (15)
C4—C5—C6—C7−174.6 (2)C11—C10—N2—C959.8 (2)
C1—C6—C7—O1−76.6 (3)C11—C10—N2—S1−159.43 (14)
C5—C6—C7—O197.4 (3)C9—N2—S1—O2−44.59 (18)
C1—C6—C7—N1106.4 (2)C10—N2—S1—O2176.77 (15)
C5—C6—C7—N1−79.5 (3)C9—N2—S1—O3−173.63 (15)
N1—C8—C9—N255.6 (2)C10—N2—S1—O347.72 (18)
N2—C10—C11—N1−54.7 (2)C9—N2—S1—C1271.02 (17)
C17—C12—C13—C141.0 (3)C10—N2—S1—C12−67.62 (17)
S1—C12—C13—C14179.43 (16)C13—C12—S1—O218.83 (19)
C12—C13—C14—C150.5 (3)C17—C12—S1—O2−162.78 (17)
C13—C14—C15—C16−2.0 (3)C13—C12—S1—O3149.92 (17)
C13—C14—C15—C18176.9 (2)C17—C12—S1—O3−31.70 (19)
C14—C15—C16—C172.1 (3)C13—C12—S1—N2−95.85 (17)
C18—C15—C16—C17−176.9 (2)C17—C12—S1—N282.53 (18)
D—H···AD—HH···AD···AD—H···A
C4—H4···O3i0.932.583.495 (3)169
C8—H8A···O3ii0.972.343.255 (3)157
C10—H10B···O1iii0.972.483.402 (3)159
C8—H8B···F1iv0.972.573.518 (3)165
C11—H11A···F2iv0.972.563.296 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O3i 0.932.583.495 (3)169
C8—H8A⋯O3ii 0.972.343.255 (3)157
C10—H10B⋯O1iii 0.972.483.402 (3)159
C8—H8B⋯F1iv 0.972.573.518 (3)165
C11—H11A⋯F2iv 0.972.563.296 (3)133

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  4-Meth-oxy-N-(pyridin-4-ylmeth-yl)-3-(tri-fluoro-meth-yl)benzamide monohydrate.

Authors:  S Sreenivasa; N R Mohan; Vijith Kumar; B S Palakshamurthy; D B Arunakumar; P A Suchetan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-31

2.  An unknown solvate of 1-(2,4-di-chloro-benz-yl)-4-[(4-methyl-phen-yl)sulfon-yl]piperazine.

Authors:  S Sreenivasa; K E Manojkumar; H C Anitha; P A Suchetan; B S Palakshamurthy; Yenagi Jayashree; J Tonannavar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-24

3.  1-(3,4-Di-fluoro-benz-yl)-4-(4-methyl-phenyl-sulfon-yl)piperazine.

Authors:  S Sreenivasa; H C Anitha; P A Suchetan; B S Palakshamurthy; J Savanur; J Tonannavar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  3 in total

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