Literature DB >> 23723881

5-(Adamantan-1-yl)-3-anilinomethyl-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Abdul-Malek S Al-Tamimi1, Omar A Al-Deeb, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C19H23N3OS, the oxa-diazole and benzene rings are inclined at a dihedral angle of 50.30 (11)°, with the major twist between them occurring at the ring-methyl-ene N-C bond [N-N-C-N torsion angle = -101.2 (2)°]. In the crystal, helical supra-molecular chains along [010] are sustained by N-H⋯S hydrogen bonds. These are linked into layers lying parallel to (-101) by methyl-ene-phenyl C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23723881      PMCID: PMC3648261          DOI: 10.1107/S1600536813009835

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-viral and anti-inflammatory activity of adamantane derivatives, see: El-Emam et al. (2004 ▶); El-Emam & Ibrahim (1991 ▶). For the structure of the 4-fluoro derivative, see: Al-Tamimi et al. (2013 ▶).

Experimental

Crystal data

C19H23N3OS M = 341.46 Monoclinic, a = 14.1326 (13) Å b = 7.1179 (5) Å c = 18.3685 (16) Å β = 105.546 (10)° V = 1780.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 295 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.863, T max = 1.000 12073 measured reflections 4115 independent reflections 2827 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.131 S = 1.03 4115 reflections 221 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009835/hb7068sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009835/hb7068Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009835/hb7068Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H23N3OSF(000) = 728
Mr = 341.46Dx = 1.274 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2861 reflections
a = 14.1326 (13) Åθ = 2.9–27.5°
b = 7.1179 (5) ŵ = 0.19 mm1
c = 18.3685 (16) ÅT = 295 K
β = 105.546 (10)°Prism, colourless
V = 1780.2 (3) Å30.40 × 0.30 × 0.20 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4115 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2827 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.033
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.0°
ω scanh = −16→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −7→9
Tmin = 0.863, Tmax = 1.000l = −23→22
12073 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0529P)2 + 0.3647P] where P = (Fo2 + 2Fc2)/3
4115 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.27 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.24181 (4)0.53985 (8)0.68790 (3)0.05916 (19)
O10.37654 (9)0.79478 (17)0.67903 (7)0.0445 (3)
N10.40128 (11)0.6798 (2)0.79036 (8)0.0443 (4)
N20.47627 (11)0.8094 (2)0.79447 (8)0.0439 (4)
N30.42471 (14)0.4044 (3)0.87149 (10)0.0572 (5)
H30.3797 (12)0.317 (2)0.8616 (12)0.064 (7)*
C10.33997 (14)0.6695 (2)0.72114 (10)0.0434 (4)
C20.45822 (13)0.8739 (2)0.72695 (9)0.0387 (4)
C30.51147 (13)1.0228 (2)0.69660 (9)0.0380 (4)
C40.44544 (15)1.1970 (3)0.67713 (12)0.0521 (5)
H4A0.38501.16440.63970.063*
H4B0.42881.24150.72200.063*
C50.49874 (17)1.3518 (3)0.64617 (13)0.0600 (6)
H50.45631.46270.63400.072*
C60.52324 (16)1.2811 (3)0.57462 (12)0.0601 (6)
H6A0.46321.24840.53680.072*
H6B0.55621.37930.55410.072*
C70.58959 (15)1.1093 (3)0.59392 (10)0.0499 (5)
H70.60541.06470.54810.060*
C80.53678 (15)0.9534 (3)0.62449 (10)0.0445 (4)
H8A0.57860.84330.63600.053*
H8B0.47710.91880.58670.053*
C90.60678 (14)1.0759 (3)0.75559 (9)0.0445 (4)
H9A0.59191.11900.80140.053*
H9B0.64900.96650.76800.053*
C100.65936 (15)1.2308 (3)0.72437 (11)0.0516 (5)
H100.72011.26440.76240.062*
C110.59323 (18)1.4034 (3)0.70569 (13)0.0638 (6)
H11A0.62701.50300.68670.077*
H11B0.57771.44840.75100.077*
C120.68424 (15)1.1618 (3)0.65259 (11)0.0525 (5)
H12A0.71801.26010.63290.063*
H12B0.72721.05340.66420.063*
C130.38778 (16)0.5893 (3)0.85927 (11)0.0539 (5)
H13A0.41990.66550.90260.065*
H13B0.31820.58690.85620.065*
C140.51825 (16)0.3569 (3)0.91240 (10)0.0501 (5)
C150.59359 (18)0.4873 (4)0.93158 (12)0.0721 (7)
H150.58210.61270.91780.087*
C160.6873 (2)0.4277 (6)0.97194 (15)0.0973 (11)
H160.73810.51450.98560.117*
C170.7051 (2)0.2421 (6)0.99156 (16)0.1006 (11)
H170.76790.20371.01780.121*
C180.6307 (2)0.1144 (5)0.97258 (14)0.0864 (9)
H180.6427−0.01120.98580.104*
C190.53828 (19)0.1709 (3)0.93402 (11)0.0643 (6)
H190.48780.08300.92200.077*
U11U22U33U12U13U23
S10.0456 (3)0.0447 (3)0.0819 (4)−0.0051 (2)0.0079 (3)0.0002 (2)
O10.0420 (7)0.0413 (7)0.0474 (7)−0.0013 (6)0.0072 (6)0.0018 (5)
N10.0449 (9)0.0411 (8)0.0483 (8)−0.0022 (8)0.0147 (7)0.0023 (6)
N20.0435 (9)0.0417 (8)0.0467 (8)−0.0038 (8)0.0126 (7)0.0011 (7)
N30.0549 (11)0.0478 (10)0.0605 (10)−0.0125 (9)0.0007 (9)0.0073 (8)
C10.0428 (10)0.0340 (9)0.0558 (11)0.0045 (8)0.0171 (9)0.0021 (8)
C20.0375 (10)0.0371 (9)0.0412 (9)0.0024 (8)0.0101 (8)−0.0024 (7)
C30.0389 (10)0.0354 (9)0.0403 (9)0.0024 (8)0.0115 (8)−0.0006 (7)
C40.0488 (12)0.0452 (11)0.0661 (12)0.0104 (10)0.0217 (10)0.0070 (9)
C50.0618 (14)0.0390 (10)0.0846 (15)0.0146 (10)0.0291 (12)0.0150 (10)
C60.0578 (13)0.0620 (13)0.0601 (12)0.0056 (11)0.0154 (11)0.0230 (10)
C70.0545 (12)0.0577 (12)0.0401 (9)0.0046 (10)0.0173 (9)0.0026 (8)
C80.0491 (11)0.0428 (10)0.0412 (9)0.0030 (9)0.0117 (8)−0.0023 (7)
C90.0454 (11)0.0485 (11)0.0400 (9)−0.0011 (9)0.0117 (8)−0.0012 (8)
C100.0492 (11)0.0535 (12)0.0508 (11)−0.0106 (10)0.0115 (9)−0.0037 (9)
C110.0811 (17)0.0411 (11)0.0773 (14)−0.0083 (12)0.0352 (13)−0.0054 (10)
C120.0461 (11)0.0593 (12)0.0550 (11)0.0023 (10)0.0188 (9)0.0079 (9)
C130.0588 (13)0.0555 (12)0.0532 (11)−0.0052 (11)0.0250 (10)0.0048 (9)
C140.0522 (12)0.0644 (13)0.0340 (9)−0.0061 (11)0.0121 (9)0.0013 (8)
C150.0603 (15)0.0996 (19)0.0548 (12)−0.0252 (14)0.0124 (11)0.0134 (12)
C160.0567 (17)0.168 (3)0.0676 (16)−0.032 (2)0.0168 (14)0.0173 (19)
C170.0655 (19)0.173 (4)0.0645 (16)0.026 (2)0.0193 (15)0.025 (2)
C180.093 (2)0.106 (2)0.0594 (14)0.032 (2)0.0173 (15)0.0027 (14)
C190.0756 (16)0.0685 (15)0.0453 (11)0.0103 (13)0.0101 (11)−0.0020 (10)
S1—C11.642 (2)C8—H8A0.9700
O1—C11.369 (2)C8—H8B0.9700
O1—C21.371 (2)C9—C101.525 (3)
N1—C11.335 (2)C9—H9A0.9700
N1—N21.392 (2)C9—H9B0.9700
N1—C131.478 (2)C10—C111.526 (3)
N2—C21.283 (2)C10—C121.533 (3)
N3—C141.376 (3)C10—H100.9800
N3—C131.411 (3)C11—H11A0.9700
N3—H30.872 (10)C11—H11B0.9700
C2—C31.492 (2)C12—H12A0.9700
C3—C91.533 (3)C12—H12B0.9700
C3—C41.535 (2)C13—H13A0.9700
C3—C81.543 (2)C13—H13B0.9700
C4—C51.528 (3)C14—C151.385 (3)
C4—H4A0.9700C14—C191.389 (3)
C4—H4B0.9700C15—C161.399 (4)
C5—C111.527 (3)C15—H150.9300
C5—C61.531 (3)C16—C171.375 (5)
C5—H50.9800C16—H160.9300
C6—C71.524 (3)C17—C181.363 (4)
C6—H6A0.9700C17—H170.9300
C6—H6B0.9700C18—C191.368 (3)
C7—C121.522 (3)C18—H180.9300
C7—C81.526 (3)C19—H190.9300
C7—H70.9800
C1—O1—C2106.57 (13)H8A—C8—H8B108.2
C1—N1—N2112.24 (14)C10—C9—C3109.68 (15)
C1—N1—C13126.30 (16)C10—C9—H9A109.7
N2—N1—C13120.92 (15)C3—C9—H9A109.7
C2—N2—N1103.52 (15)C10—C9—H9B109.7
C14—N3—C13125.16 (19)C3—C9—H9B109.7
C14—N3—H3118.6 (15)H9A—C9—H9B108.2
C13—N3—H3114.4 (15)C9—C10—C11109.63 (16)
N1—C1—O1104.80 (15)C9—C10—C12109.81 (16)
N1—C1—S1130.78 (14)C11—C10—C12109.40 (16)
O1—C1—S1124.43 (14)C9—C10—H10109.3
N2—C2—O1112.87 (15)C11—C10—H10109.3
N2—C2—C3128.79 (16)C12—C10—H10109.3
O1—C2—C3118.31 (14)C10—C11—C5109.43 (17)
C2—C3—C9110.28 (14)C10—C11—H11A109.8
C2—C3—C4108.94 (14)C5—C11—H11A109.8
C9—C3—C4109.27 (15)C10—C11—H11B109.8
C2—C3—C8110.47 (14)C5—C11—H11B109.8
C9—C3—C8108.90 (14)H11A—C11—H11B108.2
C4—C3—C8108.96 (14)C7—C12—C10109.08 (15)
C5—C4—C3109.84 (15)C7—C12—H12A109.9
C5—C4—H4A109.7C10—C12—H12A109.9
C3—C4—H4A109.7C7—C12—H12B109.9
C5—C4—H4B109.7C10—C12—H12B109.9
C3—C4—H4B109.7H12A—C12—H12B108.3
H4A—C4—H4B108.2N3—C13—N1114.57 (16)
C4—C5—C11109.33 (17)N3—C13—H13A108.6
C4—C5—C6109.28 (17)N1—C13—H13A108.6
C11—C5—C6109.76 (18)N3—C13—H13B108.6
C4—C5—H5109.5N1—C13—H13B108.6
C11—C5—H5109.5H13A—C13—H13B107.6
C6—C5—H5109.5N3—C14—C15122.3 (2)
C7—C6—C5109.30 (16)N3—C14—C19118.8 (2)
C7—C6—H6A109.8C15—C14—C19118.8 (2)
C5—C6—H6A109.8C14—C15—C16119.0 (3)
C7—C6—H6B109.8C14—C15—H15120.5
C5—C6—H6B109.8C16—C15—H15120.5
H6A—C6—H6B108.3C17—C16—C15120.7 (3)
C12—C7—C6109.66 (17)C17—C16—H16119.6
C12—C7—C8109.99 (15)C15—C16—H16119.6
C6—C7—C8109.76 (15)C18—C17—C16120.0 (3)
C12—C7—H7109.1C18—C17—H17120.0
C6—C7—H7109.1C16—C17—H17120.0
C8—C7—H7109.1C17—C18—C19120.0 (3)
C7—C8—C3109.39 (14)C17—C18—H18120.0
C7—C8—H8A109.8C19—C18—H18120.0
C3—C8—H8A109.8C18—C19—C14121.4 (3)
C7—C8—H8B109.8C18—C19—H19119.3
C3—C8—H8B109.8C14—C19—H19119.3
C1—N1—N2—C2−0.20 (19)C2—C3—C8—C7179.05 (15)
C13—N1—N2—C2−172.34 (16)C9—C3—C8—C7−59.69 (19)
N2—N1—C1—O10.44 (19)C4—C3—C8—C759.4 (2)
C13—N1—C1—O1172.06 (15)C2—C3—C9—C10−178.88 (14)
N2—N1—C1—S1179.88 (13)C4—C3—C9—C10−59.16 (18)
C13—N1—C1—S1−8.5 (3)C8—C3—C9—C1059.75 (19)
C2—O1—C1—N1−0.49 (17)C3—C9—C10—C1160.0 (2)
C2—O1—C1—S1−179.97 (13)C3—C9—C10—C12−60.2 (2)
N1—N2—C2—O1−0.13 (18)C9—C10—C11—C5−60.5 (2)
N1—N2—C2—C3177.74 (16)C12—C10—C11—C560.0 (2)
C1—O1—C2—N20.40 (19)C4—C5—C11—C1060.3 (2)
C1—O1—C2—C3−177.71 (14)C6—C5—C11—C10−59.6 (2)
N2—C2—C3—C99.1 (2)C6—C7—C12—C1060.7 (2)
O1—C2—C3—C9−173.15 (14)C8—C7—C12—C10−60.1 (2)
N2—C2—C3—C4−110.8 (2)C9—C10—C12—C759.9 (2)
O1—C2—C3—C466.93 (19)C11—C10—C12—C7−60.5 (2)
N2—C2—C3—C8129.51 (19)C14—N3—C13—N190.8 (2)
O1—C2—C3—C8−52.7 (2)C1—N1—C13—N387.8 (2)
C2—C3—C4—C5179.79 (16)N2—N1—C13—N3−101.2 (2)
C9—C3—C4—C559.2 (2)C13—N3—C14—C15−15.3 (3)
C8—C3—C4—C5−59.6 (2)C13—N3—C14—C19165.89 (18)
C3—C4—C5—C11−59.9 (2)N3—C14—C15—C16−178.7 (2)
C3—C4—C5—C660.3 (2)C19—C14—C15—C160.1 (3)
C4—C5—C6—C7−60.4 (2)C14—C15—C16—C170.9 (4)
C11—C5—C6—C759.5 (2)C15—C16—C17—C18−0.9 (4)
C5—C6—C7—C12−60.2 (2)C16—C17—C18—C190.0 (4)
C5—C6—C7—C860.7 (2)C17—C18—C19—C141.0 (3)
C12—C7—C8—C360.39 (19)N3—C14—C19—C18177.80 (19)
C6—C7—C8—C3−60.3 (2)C15—C14—C19—C18−1.0 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···S1i0.87 (1)2.62 (1)3.4763 (19)170 (2)
C13—H13A···Cg1ii0.972.833.549 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C14–C19 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯S1i 0.87 (1)2.62 (1)3.4763 (19)170 (2)
C13—H13ACg1ii 0.972.833.549 (2)132

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antimicrobial, and anti-HIV-1 activity of certain 5-(1-adamantyl)-2-substituted thio-1,3,4-oxadiazoles and 5-(1-adamantyl)-3-substituted aminomethyl-1,3,4-oxadiazoline-2-thiones.

Authors:  Ali A El-Emam; Omar A Al-Deeb; Mohamed Al-Omar; Jochen Lehmann
Journal:  Bioorg Med Chem       Date:  2004-10-01       Impact factor: 3.641

3.  Synthesis and anti-inflammatory and analgesic activity of some 3-(1-adamantyl)-4-substituted-5-mercapto-1,2,4-triazoles.

Authors:  A A el-Emam; T M Ibrahim
Journal:  Arzneimittelforschung       Date:  1991-12

4.  5-(Adamantan-1-yl)-3-[(4-fluoro-anilino)meth-yl]-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Authors:  Abdul-Malek S Al-Tamimi; Ahmed M Alafeefy; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  4 in total
  1 in total

1.  5-(Adamantan-1-yl)-3-[(4-fluoro-anilino)meth-yl]-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Authors:  Abdul-Malek S Al-Tamimi; Ahmed M Alafeefy; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  1 in total

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