Literature DB >> 23723882

5-(Adamantan-1-yl)-3-[(4-fluoro-anilino)meth-yl]-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Abdul-Malek S Al-Tamimi1, Ahmed M Alafeefy, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C19H22FN3OS, the dihedral angle between the inclined oxa-diazole and benzene rings is 52.7 (3)°. In the crystal, helical supra-molecular chains along [100] are sustained by N-H⋯S hydrogen bonds supported by methyl-ene-benzene C-H⋯π inter-actions. The crystal studied was an inversion twin with the fractional contribution of the minor component being 0.33 (14).

Entities:  

Year:  2013        PMID: 23723882      PMCID: PMC3648262          DOI: 10.1107/S1600536813009823

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological background to adamantyl-1,3,4-oxa­diazole derivatives and for the structure of the phenyl derivative, see: Al-Tamimi et al. (2013 ▶).

Experimental

Crystal data

C19H22FN3OS M = 359.47 Orthorhombic, a = 7.1683 (8) Å b = 10.6621 (11) Å c = 23.592 (3) Å V = 1803.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 295 K 0.30 × 0.10 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.698, T max = 1.000 7867 measured reflections 3902 independent reflections 2177 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.158 S = 0.98 3902 reflections 231 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1501 Friedel pairs Flack parameter: 0.67 (14) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009823/hb7069sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009823/hb7069Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009823/hb7069Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H22FN3OSF(000) = 760
Mr = 359.47Dx = 1.324 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1361 reflections
a = 7.1683 (8) Åθ = 2.8–27.5°
b = 10.6621 (11) ŵ = 0.20 mm1
c = 23.592 (3) ÅT = 295 K
V = 1803.1 (3) Å3Prism, colourless
Z = 40.30 × 0.10 × 0.10 mm
Agilent SuperNova Dual diffractometer with an Atlas detector3902 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2177 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.043
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.0°
ω scanh = −9→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→13
Tmin = 0.698, Tmax = 1.000l = −30→30
7867 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.158w = 1/[σ2(Fo2) + (0.0632P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
3902 reflectionsΔρmax = 0.26 e Å3
231 parametersΔρmin = −0.18 e Å3
1 restraintAbsolute structure: Flack (1983), 1501 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.67 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.06569 (15)0.33471 (10)0.03304 (5)0.0836 (4)
F1−0.2851 (7)−0.4312 (3)0.12970 (14)0.1582 (16)
O10.3173 (4)0.2563 (2)0.10859 (11)0.0620 (6)
N10.3424 (4)0.0519 (3)0.09315 (12)0.0587 (8)
N20.2100 (4)0.1064 (3)0.05696 (13)0.0611 (8)
N3−0.0577 (5)−0.0053 (3)0.01856 (17)0.0778 (10)
H3−0.147 (5)0.037 (4)0.0020 (17)0.098 (15)*
C10.1962 (5)0.2294 (3)0.06489 (17)0.0612 (9)
C20.4025 (5)0.1442 (3)0.12294 (15)0.0541 (8)
C30.5497 (5)0.1445 (3)0.16727 (14)0.0511 (8)
C40.7151 (6)0.2249 (4)0.14706 (16)0.0696 (11)
H4A0.76430.19110.11190.083*
H4B0.67360.31000.14000.083*
C50.8671 (6)0.2249 (4)0.19230 (18)0.0777 (13)
H50.97290.27560.17930.093*
C60.7903 (7)0.2793 (4)0.24685 (19)0.0832 (13)
H6A0.74760.36440.24030.100*
H6B0.88790.28190.27530.100*
C70.6290 (6)0.1993 (3)0.26791 (17)0.0675 (11)
H70.58080.23390.30350.081*
C80.4746 (5)0.1993 (3)0.22315 (15)0.0623 (10)
H8A0.43110.28430.21690.075*
H8B0.37010.14940.23630.075*
C90.6160 (5)0.0102 (3)0.17771 (15)0.0592 (9)
H9A0.5122−0.04090.19050.071*
H9B0.6633−0.02550.14270.071*
C100.7691 (6)0.0105 (4)0.22242 (17)0.0670 (11)
H100.8114−0.07570.22900.080*
C110.6935 (7)0.0645 (4)0.27741 (17)0.0738 (11)
H11A0.79000.06270.30620.089*
H11B0.58960.01400.29060.089*
C120.9315 (6)0.0890 (5)0.2021 (2)0.0875 (13)
H12A0.98010.05450.16700.105*
H12B1.03040.08750.23010.105*
C130.1279 (6)0.0329 (4)0.01020 (16)0.0736 (11)
H13A0.13370.0827−0.02420.088*
H13B0.2040−0.04120.00420.088*
C14−0.1079 (6)−0.1144 (3)0.04713 (15)0.0643 (10)
C15−0.2947 (6)−0.1525 (4)0.04433 (18)0.0758 (11)
H15−0.3804−0.10570.02360.091*
C16−0.3509 (9)−0.2588 (5)0.0722 (2)0.0968 (16)
H16−0.4748−0.28430.07040.116*
C17−0.2266 (12)−0.3262 (5)0.1021 (2)0.1003 (18)
C18−0.0461 (10)−0.2929 (5)0.1046 (2)0.1024 (17)
H180.0378−0.34290.12450.123*
C190.0173 (7)−0.1844 (4)0.07792 (17)0.0835 (13)
H190.1414−0.15980.08090.100*
U11U22U33U12U13U23
S10.0517 (6)0.0873 (7)0.1118 (8)0.0022 (6)−0.0058 (6)0.0342 (7)
F10.245 (5)0.104 (2)0.126 (2)−0.040 (3)0.038 (3)0.021 (2)
O10.0485 (14)0.0574 (14)0.0800 (16)−0.0034 (13)−0.0044 (14)0.0029 (13)
N10.0481 (18)0.0599 (18)0.0681 (18)−0.0007 (16)−0.0024 (15)0.0012 (16)
N20.0510 (19)0.0658 (19)0.0666 (19)−0.0018 (16)−0.0026 (15)0.0062 (16)
N30.050 (2)0.075 (2)0.108 (3)−0.003 (2)−0.021 (2)0.013 (2)
C10.042 (2)0.069 (2)0.073 (2)−0.006 (2)0.0028 (19)0.012 (2)
C20.0405 (19)0.0489 (19)0.073 (2)0.0026 (17)0.0036 (17)0.0031 (18)
C30.0438 (19)0.0481 (18)0.0613 (19)−0.0078 (17)−0.0004 (16)−0.0019 (16)
C40.052 (2)0.079 (2)0.077 (2)−0.019 (2)0.002 (2)0.007 (2)
C50.052 (2)0.098 (3)0.084 (3)−0.029 (2)0.002 (2)0.010 (2)
C60.083 (3)0.070 (2)0.097 (3)−0.023 (3)−0.026 (3)0.001 (2)
C70.070 (3)0.064 (2)0.068 (2)−0.015 (2)0.001 (2)−0.014 (2)
C80.053 (2)0.057 (2)0.077 (2)−0.0014 (19)0.0070 (19)−0.006 (2)
C90.052 (2)0.056 (2)0.070 (2)0.0021 (18)−0.0048 (18)−0.0083 (17)
C100.057 (3)0.059 (2)0.086 (3)0.004 (2)−0.012 (2)−0.002 (2)
C110.073 (3)0.074 (3)0.075 (3)−0.010 (2)−0.007 (2)0.004 (2)
C120.048 (2)0.120 (4)0.095 (3)0.008 (3)−0.001 (2)−0.003 (3)
C130.076 (3)0.079 (3)0.067 (2)−0.013 (2)−0.011 (2)0.005 (2)
C140.067 (3)0.061 (2)0.065 (2)−0.002 (2)−0.004 (2)−0.009 (2)
C150.070 (3)0.071 (2)0.086 (3)−0.006 (2)0.001 (2)−0.019 (2)
C160.105 (4)0.086 (3)0.099 (4)−0.024 (3)0.021 (3)−0.024 (3)
C170.158 (6)0.072 (3)0.071 (3)−0.020 (4)0.014 (4)−0.001 (3)
C180.138 (5)0.086 (3)0.083 (3)0.003 (4)−0.027 (3)0.012 (3)
C190.086 (3)0.084 (3)0.080 (3)0.000 (3)−0.025 (2)0.007 (3)
S1—C11.643 (4)C7—H70.9800
F1—C171.361 (5)C8—H8A0.9700
O1—C11.378 (5)C8—H8B0.9700
O1—C21.385 (4)C9—C101.522 (5)
N1—C21.283 (4)C9—H9A0.9700
N1—N21.402 (4)C9—H9B0.9700
N2—C11.328 (5)C10—C121.512 (6)
N2—C131.476 (5)C10—C111.519 (5)
N3—C141.392 (5)C10—H100.9800
N3—C131.406 (5)C11—H11A0.9700
N3—H30.874 (19)C11—H11B0.9700
C2—C31.486 (5)C12—H12A0.9700
C3—C91.529 (5)C12—H12B0.9700
C3—C41.538 (5)C13—H13A0.9700
C3—C81.539 (5)C13—H13B0.9700
C4—C51.526 (6)C14—C191.374 (5)
C4—H4A0.9700C14—C151.401 (6)
C4—H4B0.9700C15—C161.371 (6)
C5—C61.515 (6)C15—H150.9300
C5—C121.538 (6)C16—C171.345 (8)
C5—H50.9800C16—H160.9300
C6—C71.521 (6)C17—C181.343 (8)
C6—H6A0.9700C18—C191.394 (6)
C6—H6B0.9700C18—H180.9300
C7—C111.526 (5)C19—H190.9300
C7—C81.530 (5)
C1—O1—C2106.3 (3)H8A—C8—H8B108.2
C2—N1—N2104.1 (3)C10—C9—C3109.5 (3)
C1—N2—N1112.0 (3)C10—C9—H9A109.8
C1—N2—C13126.8 (3)C3—C9—H9A109.8
N1—N2—C13120.3 (3)C10—C9—H9B109.8
C14—N3—C13123.7 (4)C3—C9—H9B109.8
C14—N3—H3117 (3)H9A—C9—H9B108.2
C13—N3—H3119 (3)C12—C10—C9109.7 (3)
N2—C1—O1105.3 (3)C12—C10—C11109.6 (3)
N2—C1—S1130.8 (3)C9—C10—C11109.6 (3)
O1—C1—S1123.9 (3)C12—C10—H10109.3
N1—C2—O1112.3 (3)C9—C10—H10109.3
N1—C2—C3128.7 (3)C11—C10—H10109.3
O1—C2—C3118.9 (3)C10—C11—C7109.8 (3)
C2—C3—C9109.4 (3)C10—C11—H11A109.7
C2—C3—C4109.3 (3)C7—C11—H11A109.7
C9—C3—C4109.4 (3)C10—C11—H11B109.7
C2—C3—C8110.8 (3)C7—C11—H11B109.7
C9—C3—C8109.0 (3)H11A—C11—H11B108.2
C4—C3—C8108.9 (3)C10—C12—C5109.8 (3)
C5—C4—C3109.5 (3)C10—C12—H12A109.7
C5—C4—H4A109.8C5—C12—H12A109.7
C3—C4—H4A109.8C10—C12—H12B109.7
C5—C4—H4B109.8C5—C12—H12B109.7
C3—C4—H4B109.8H12A—C12—H12B108.2
H4A—C4—H4B108.2N3—C13—N2115.2 (3)
C6—C5—C4109.6 (4)N3—C13—H13A108.5
C6—C5—C12110.0 (4)N2—C13—H13A108.5
C4—C5—C12108.6 (4)N3—C13—H13B108.5
C6—C5—H5109.6N2—C13—H13B108.5
C4—C5—H5109.6H13A—C13—H13B107.5
C12—C5—H5109.6C19—C14—N3122.8 (4)
C5—C6—C7109.8 (3)C19—C14—C15119.5 (4)
C5—C6—H6A109.7N3—C14—C15117.8 (4)
C7—C6—H6A109.7C16—C15—C14119.8 (5)
C5—C6—H6B109.7C16—C15—H15120.1
C7—C6—H6B109.7C14—C15—H15120.1
H6A—C6—H6B108.2C17—C16—C15119.9 (5)
C6—C7—C11110.3 (4)C17—C16—H16120.0
C6—C7—C8108.9 (3)C15—C16—H16120.0
C11—C7—C8108.7 (3)C18—C17—C16121.3 (5)
C6—C7—H7109.6C18—C17—F1119.6 (7)
C11—C7—H7109.6C16—C17—F1119.1 (7)
C8—C7—H7109.6C17—C18—C19120.9 (5)
C7—C8—C3109.7 (3)C17—C18—H18119.6
C7—C8—H8A109.7C19—C18—H18119.6
C3—C8—H8A109.7C14—C19—C18118.5 (5)
C7—C8—H8B109.7C14—C19—H19120.8
C3—C8—H8B109.7C18—C19—H19120.8
C2—N1—N2—C11.2 (4)C9—C3—C8—C759.9 (4)
C2—N1—N2—C13171.3 (3)C4—C3—C8—C7−59.4 (4)
N1—N2—C1—O1−2.0 (4)C2—C3—C9—C10179.1 (3)
C13—N2—C1—O1−171.3 (3)C4—C3—C9—C1059.4 (4)
N1—N2—C1—S1179.0 (3)C8—C3—C9—C10−59.6 (4)
C13—N2—C1—S19.8 (6)C3—C9—C10—C12−60.1 (4)
C2—O1—C1—N22.0 (4)C3—C9—C10—C1160.3 (4)
C2—O1—C1—S1−179.0 (3)C12—C10—C11—C759.6 (4)
N2—N1—C2—O10.1 (4)C9—C10—C11—C7−60.8 (4)
N2—N1—C2—C3−177.7 (3)C6—C7—C11—C10−59.0 (4)
C1—O1—C2—N1−1.3 (4)C8—C7—C11—C1060.4 (4)
C1—O1—C2—C3176.7 (3)C9—C10—C12—C560.8 (4)
N1—C2—C3—C9−5.0 (5)C11—C10—C12—C5−59.5 (5)
O1—C2—C3—C9177.4 (3)C6—C5—C12—C1059.2 (5)
N1—C2—C3—C4114.8 (4)C4—C5—C12—C10−60.7 (5)
O1—C2—C3—C4−62.9 (4)C14—N3—C13—N2−86.1 (5)
N1—C2—C3—C8−125.2 (4)C1—N2—C13—N3−85.2 (5)
O1—C2—C3—C857.1 (4)N1—N2—C13—N3106.3 (4)
C2—C3—C4—C5−179.7 (3)C13—N3—C14—C1911.1 (6)
C9—C3—C4—C5−59.9 (4)C13—N3—C14—C15−169.5 (4)
C8—C3—C4—C559.1 (4)C19—C14—C15—C16−0.1 (6)
C3—C4—C5—C6−60.2 (4)N3—C14—C15—C16−179.5 (4)
C3—C4—C5—C1260.0 (4)C14—C15—C16—C170.0 (6)
C4—C5—C6—C761.1 (5)C15—C16—C17—C18−1.2 (7)
C12—C5—C6—C7−58.2 (5)C15—C16—C17—F1179.7 (4)
C5—C6—C7—C1158.3 (5)C16—C17—C18—C192.4 (8)
C5—C6—C7—C8−60.9 (4)F1—C17—C18—C19−178.5 (4)
C6—C7—C8—C360.2 (4)N3—C14—C19—C18−179.4 (4)
C11—C7—C8—C3−60.0 (4)C15—C14—C19—C181.2 (6)
C2—C3—C8—C7−179.7 (3)C17—C18—C19—C14−2.4 (7)
D—H···AD—HH···AD···AD—H···A
N3—H3···S1i0.87 (2)2.61 (2)3.475 (4)172 (4)
C9—H9A···Cg1ii0.972.903.800 (5)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C14–C19 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯S1i 0.87 (2)2.61 (2)3.475 (4)172 (4)
C9—H9ACg1ii 0.972.903.800 (5)154

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-(Adamantan-1-yl)-3-anilinomethyl-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Authors:  Abdul-Malek S Al-Tamimi; Omar A Al-Deeb; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  2 in total
  1 in total

1.  5-(Adamantan-1-yl)-3-anilinomethyl-2,3-di-hydro-1,3,4-oxa-diazole-2-thione.

Authors:  Abdul-Malek S Al-Tamimi; Omar A Al-Deeb; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  1 in total

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