Literature DB >> 23722930

Review: toxicometabolomics.

Mounir Bouhifd1, Thomas Hartung, Helena T Hogberg, Andre Kleensang, Liang Zhao.   

Abstract

Metabolomics use in toxicology is rapidly increasing, particularly owing to advances in mass spectroscopy, which is widely used in the life sciences for phenotyping disease states. Toxicology has the advantage of having the disease agent, the toxicant, available for experimental induction of metabolomics changes monitored over time and dose. This review summarizes the different technologies employed and gives examples of their use in various areas of toxicology. A prominent use of metabolomics is the identification of signatures of toxicity - patterns of metabolite changes predictive of a hazard manifestation. Increasingly, such signatures indicative of a certain hazard manifestation are identified, suggesting that certain modes of action result in specific derangements of the metabolism. This might enable the deduction of underlying pathways of toxicity, which, in their entirety, form the Human Toxome, a key concept for implementing the vision of Toxicity Testing for the 21st century. This review summarizes the current state of metabolomics technologies and principles, their uses in toxicology and gives a thorough overview on metabolomics bioinformatics, pathway identification and quality assurance. In addition, this review lays out the prospects for further metabolomics application also in a regulatory context.
Copyright © 2013 John Wiley & Sons, Ltd.

Entities:  

Keywords:  analytical chemistry; bioinformatics; metabolomics; pathways of toxicity; quality assurance; toxicity testing for the 21st century

Mesh:

Year:  2013        PMID: 23722930      PMCID: PMC3808515          DOI: 10.1002/jat.2874

Source DB:  PubMed          Journal:  J Appl Toxicol        ISSN: 0260-437X            Impact factor:   3.446


  171 in total

Review 1.  NMR-based plant metabolomics: where do we stand, where do we go?

Authors:  Hye Kyong Kim; Young Hae Choi; Robert Verpoorte
Journal:  Trends Biotechnol       Date:  2011-03-23       Impact factor: 19.536

2.  A protocol for the investigation of the intracellular Staphylococcus aureus metabolome.

Authors:  Hanna Meyer; Manuel Liebeke; Michael Lalk
Journal:  Anal Biochem       Date:  2010-03-06       Impact factor: 3.365

3.  Expression of P2X7 receptor increases in vivo tumor growth.

Authors:  Elena Adinolfi; Lizzia Raffaghello; Anna Lisa Giuliani; Luigi Cavazzini; Marina Capece; Paola Chiozzi; Giovanna Bianchi; Guido Kroemer; Vito Pistoia; Francesco Di Virgilio
Journal:  Cancer Res       Date:  2012-04-13       Impact factor: 12.701

4.  Integrated ionization approach for RRLC-MS/MS-based metabonomics: finding potential biomarkers for lung cancer.

Authors:  Zhuoling An; Yanhua Chen; Ruiping Zhang; Yongmei Song; Jianghao Sun; Jiuming He; Jinfa Bai; Lijia Dong; Qimin Zhan; Zeper Abliz
Journal:  J Proteome Res       Date:  2010-08-06       Impact factor: 4.466

5.  Serum 27-nor-5β-cholestane-3,7,12,24,25 pentol glucuronide discovered by metabolomics as potential diagnostic biomarker for epithelium ovarian cancer.

Authors:  Jing Chen; Xiaoyan Zhang; Rui Cao; Xin Lu; Sumin Zhao; Agnes Fekete; Qiang Huang; Philippe Schmitt-Kopplin; Yisheng Wang; Zhiliang Xu; Xiaoping Wan; Xiaohua Wu; Naiqing Zhao; Congjian Xu; Guowang Xu
Journal:  J Proteome Res       Date:  2011-04-19       Impact factor: 4.466

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  Quantitative metabolome analysis using capillary electrophoresis mass spectrometry.

Authors:  Tomoyoshi Soga; Yoshiaki Ohashi; Yuki Ueno; Hisako Naraoka; Masaru Tomita; Takaaki Nishioka
Journal:  J Proteome Res       Date:  2003 Sep-Oct       Impact factor: 4.466

8.  Effects of mainstream cigarette smoke on the global metabolome of human lung epithelial cells.

Authors:  Suryanarayana V Vulimiri; Manoj Misra; Jonathan T Hamm; Matthew Mitchell; Alvin Berger
Journal:  Chem Res Toxicol       Date:  2009-03-16       Impact factor: 3.739

9.  From genomics to chemical genomics: new developments in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  A novel serum metabolomics-based diagnostic approach for colorectal cancer.

Authors:  Shin Nishiumi; Takashi Kobayashi; Atsuki Ikeda; Tomoo Yoshie; Megumi Kibi; Yoshihiro Izumi; Tatsuya Okuno; Nobuhide Hayashi; Seiji Kawano; Tadaomi Takenawa; Takeshi Azuma; Masaru Yoshida
Journal:  PLoS One       Date:  2012-07-11       Impact factor: 3.240

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  45 in total

Review 1.  Developmental neurotoxicity - challenges in the 21st century and in vitro opportunities.

Authors:  Lena Smirnova; Helena T Hogberg; Marcel Leist; Thomas Hartung
Journal:  ALTEX       Date:  2014       Impact factor: 6.043

Review 2.  Transgenic mice and metabolomics for study of hepatic xenobiotic metabolism and toxicity.

Authors:  Frank J Gonzalez; Zhong-Ze Fang; Xiaochao Ma
Journal:  Expert Opin Drug Metab Toxicol       Date:  2015-04-02       Impact factor: 4.481

3.  Pathways of Toxicity.

Authors:  Andre Kleensang; Alexandra Maertens; Michael Rosenberg; Suzanne Fitzpatrick; Justin Lamb; Scott Auerbach; Richard Brennan; Kevin M Crofton; Ben Gordon; Albert J Fornace; Kevin Gaido; David Gerhold; Robin Haw; Adriano Henney; Avi Ma'ayan; Mary McBride; Stefano Monti; Michael F Ochs; Akhilesh Pandey; Roded Sharan; Rob Stierum; Stuart Tugendreich; Catherine Willett; Clemens Wittwehr; Jianguo Xia; Geoffrey W Patton; Kirk Arvidson; Mounir Bouhifd; Helena T Hogberg; Thomas Luechtefeld; Lena Smirnova; Liang Zhao; Yeyejide Adeleye; Minoru Kanehisa; Paul Carmichael; Melvin E Andersen; Thomas Hartung
Journal:  ALTEX       Date:  2013-10-15       Impact factor: 6.043

Review 4.  Experimental design and reporting standards for metabolomics studies of mammalian cell lines.

Authors:  Sarah Hayton; Garth L Maker; Ian Mullaney; Robert D Trengove
Journal:  Cell Mol Life Sci       Date:  2017-07-01       Impact factor: 9.261

5.  Proposed Confidence Scale and ID Score in the Identification of Known-Unknown Compounds Using High Resolution MS Data.

Authors:  Bertrand Rochat
Journal:  J Am Soc Mass Spectrom       Date:  2017-01-23       Impact factor: 3.109

Review 6.  Mapping the human toxome by systems toxicology.

Authors:  Mounir Bouhifd; Helena T Hogberg; Andre Kleensang; Alexandra Maertens; Liang Zhao; Thomas Hartung
Journal:  Basic Clin Pharmacol Toxicol       Date:  2014-02-15       Impact factor: 4.080

7.  Early Mechanistic Events Induced by Low Molecular Weight Polycyclic Aromatic Hydrocarbons in Mouse Lung Epithelial Cells: A Role for Eicosanoid Signaling.

Authors:  Katelyn J Siegrist; DeeDee Romo; Brad L Upham; Michael Armstrong; Kevin Quinn; Lauren Vanderlinden; Ross S Osgood; Kalpana Velmurugan; Marc Elie; Jonathan Manke; Dominik Reinhold; Nichole Reisdorph; Laura Saba; Alison K Bauer
Journal:  Toxicol Sci       Date:  2019-05-01       Impact factor: 4.849

Review 8.  Blood-borne biomarkers and bioindicators for linking exposure to health effects in environmental health science.

Authors:  M Ariel Geer Wallace; Tzipporah M Kormos; Joachim D Pleil
Journal:  J Toxicol Environ Health B Crit Rev       Date:  2016-10-19       Impact factor: 6.393

9.  In vivo toxicometabolomics reveals multi-organ and urine metabolic changes in mice upon acute exposure to human-relevant doses of 3,4-methylenedioxypyrovalerone (MDPV).

Authors:  Ana Margarida Araújo; Márcia Carvalho; Vera Marisa Costa; José Alberto Duarte; Ricardo Jorge Dinis-Oliveira; Maria de Lourdes Bastos; Paula Guedes de Pinho; Félix Carvalho
Journal:  Arch Toxicol       Date:  2020-11-19       Impact factor: 5.153

10.  Integrated testing strategies for safety assessments.

Authors:  Thomas Hartung; Tom Luechtefeld; Alexandra Maertens; Andre Kleensang
Journal:  ALTEX       Date:  2013       Impact factor: 6.043

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