Literature DB >> 23721409

The role of ligands on the equilibria between functional states of a G protein-coupled receptor.

Tae Hun Kim1, Ka Young Chung, Aashish Manglik, Alexandar L Hansen, Ron O Dror, Thomas J Mildorf, David E Shaw, Brian K Kobilka, R Scott Prosser.   

Abstract

G protein-coupled receptors exhibit a wide variety of signaling behaviors in response to different ligands. When a small label was incorporated on the cytosolic interface of transmembrane helix 6 (Cys-265), (19)F NMR spectra of the β2 adrenergic receptor (β2AR) reconstituted in maltose/neopentyl glycol detergent micelles revealed two distinct inactive states, an activation intermediate state en route to activation, and, in the presence of a G protein mimic, a predominant active state. Analysis of the spectra as a function of temperature revealed that for all ligands, the activation intermediate is entropically favored and enthalpically disfavored. β2AR enthalpy changes toward activation are notably lower than those observed with rhodopsin, a likely consequence of basal activity and the fact that the ionic lock and other interactions stabilizing the inactive state of β2AR are weaker. Positive entropy changes toward activation likely reflect greater mobility (configurational entropy) in the cytoplasmic domain, as confirmed through an order parameter analysis. Ligands greatly influence the overall changes in enthalpy and entropy of the system and the corresponding changes in population and amplitude of motion of given states, suggesting a complex landscape of states and substates.

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Year:  2013        PMID: 23721409      PMCID: PMC3763947          DOI: 10.1021/ja404305k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

Review 1.  G protein-coupled receptor allosterism and complexing.

Authors:  Arthur Christopoulos; Terry Kenakin
Journal:  Pharmacol Rev       Date:  2002-06       Impact factor: 25.468

2.  Examining the efficiency of receptor/G-protein coupling with a cleavable beta2-adrenoceptor-gsalpha fusion protein.

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Journal:  Eur J Biochem       Date:  1999-03

3.  NMR characterization of the dynamics of biomacromolecules.

Authors:  Arthur G Palmer
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

Review 4.  NMR studies of protein structure and dynamics.

Authors:  Lewis E Kay
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

5.  Functionally different agonists induce distinct conformations in the G protein coupling domain of the beta 2 adrenergic receptor.

Authors:  P Ghanouni; Z Gryczynski; J J Steenhuis; T W Lee; D L Farrens; J R Lakowicz; B K Kobilka
Journal:  J Biol Chem       Date:  2001-04-24       Impact factor: 5.157

6.  Coupling ligand structure to specific conformational switches in the beta2-adrenoceptor.

Authors:  Xiaojie Yao; Charles Parnot; Xavier Deupi; Venkata R P Ratnala; Gayathri Swaminath; David Farrens; Brian Kobilka
Journal:  Nat Chem Biol       Date:  2006-06-25       Impact factor: 15.040

7.  Direct observation of the thermal equilibria among lumirhodopsin, metarhodopsin I, and metarhodopsin II in chicken rhodopsin.

Authors:  H Imai; T Mizukami; Y Imamoto; Y Shichida
Journal:  Biochemistry       Date:  1994-11-29       Impact factor: 3.162

8.  Intrinsic dynamics of an enzyme underlies catalysis.

Authors:  Elan Z Eisenmesser; Oscar Millet; Wladimir Labeikovsky; Dmitry M Korzhnev; Magnus Wolf-Watz; Daryl A Bosco; Jack J Skalicky; Lewis E Kay; Dorothee Kern
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962

9.  Fluorotyrosine alkaline phosphatase from Escherichia coli: preparation, properties, and fluorine-19 nuclear magnetic resonance spectrum.

Authors:  B D Sykes; H I Weingarten; M J Schlesinger
Journal:  Proc Natl Acad Sci U S A       Date:  1974-02       Impact factor: 11.205

10.  Dynamically driven protein allostery.

Authors:  Nataliya Popovych; Shangjin Sun; Richard H Ebright; Charalampos G Kalodimos
Journal:  Nat Struct Mol Biol       Date:  2006-08-13       Impact factor: 15.369

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  65 in total

Review 1.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

2.  β₂-adrenergic receptor activation by agonists studied with ¹⁹F NMR spectroscopy.

Authors:  Reto Horst; Jeffrey J Liu; Raymond C Stevens; Kurt Wüthrich
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-16       Impact factor: 15.336

3.  Quantitative structural assessment of graded receptor agonism.

Authors:  Jinsai Shang; Richard Brust; Patrick R Griffin; Theodore M Kamenecka; Douglas J Kojetin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-14       Impact factor: 11.205

4.  Differences in allosteric communication pipelines in the inactive and active states of a GPCR.

Authors:  Supriyo Bhattacharya; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

5.  The dynamics of the G protein-coupled neuropeptide Y2 receptor in monounsaturated membranes investigated by solid-state NMR spectroscopy.

Authors:  Lars Thomas; Julian Kahr; Peter Schmidt; Ulrike Krug; Holger A Scheidt; Daniel Huster
Journal:  J Biomol NMR       Date:  2015-01-06       Impact factor: 2.835

Review 6.  Advances in receptor conformation research: the quest for functionally selective conformations focusing on the β2-adrenoceptor.

Authors:  Anthony Yiu-Ho Woo; Ying Song; Weizhong Zhu; Rui-Ping Xiao
Journal:  Br J Pharmacol       Date:  2015-02-27       Impact factor: 8.739

7.  Conformational plasticity of the intracellular cavity of GPCR-G-protein complexes leads to G-protein promiscuity and selectivity.

Authors:  Manbir Sandhu; Anja M Touma; Matthew Dysthe; Fredrik Sadler; Sivaraj Sivaramakrishnan; Nagarajan Vaidehi
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-28       Impact factor: 11.205

8.  Comparative molecular field analysis of fenoterol derivatives interacting with an agonist-stabilized form of the β₂-adrenergic receptor.

Authors:  Anita Plazinska; Karolina Pajak; Ewelina Rutkowska; Lucita Jimenez; Joseph Kozocas; Gary Koolpe; Mary Tanga; Lawrence Toll; Irving W Wainer; Krzysztof Jozwiak
Journal:  Bioorg Med Chem       Date:  2013-11-23       Impact factor: 3.641

Review 9.  Constitutively active rhodopsin and retinal disease.

Authors:  Paul Shin-Hyun Park
Journal:  Adv Pharmacol       Date:  2014

10.  Single-molecule view of basal activity and activation mechanisms of the G protein-coupled receptor β2AR.

Authors:  Rajan Lamichhane; Jeffrey J Liu; Goran Pljevaljcic; Kate L White; Edwin van der Schans; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich; David P Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

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