Literature DB >> 23719353

Bringing it all together: big data and HIV research.

Frederic D Bushman, Spencer Barton, Aubrey Bailey, Caitlin Greig, Nirav Malani, Sourav Bandyopadhyay, John Young, Sumit Chanda, Nevan Krogan.   

Abstract

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Year:  2013        PMID： 23719353      PMCID： PMC3671485          DOI： 10.1097/QAD.0b013e32835cb785

Source DB:  PubMed          Journal:  AIDS        ISSN： 0269-9370            Impact factor:   4.177


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  13 in total

Review 1.  HIV sequence databases.

Authors:  Carla Kuiken; Bette Korber; Robert W Shafer
Journal:  AIDS Rev       Date:  2003 Jan-Mar       Impact factor: 2.500

Review 2.  The HIVdb system for HIV-1 genotypic resistance interpretation.

Authors:  Michele W Tang; Tommy F Liu; Robert W Shafer
Journal:  Intervirology       Date:  2012-01-24       Impact factor: 1.763

3.  Global landscape of HIV-human protein complexes.

Authors:  Stefanie Jäger; Peter Cimermancic; Natali Gulbahce; Jeffrey R Johnson; Kathryn E McGovern; Starlynn C Clarke; Michael Shales; Gaelle Mercenne; Lars Pache; Kathy Li; Hilda Hernandez; Gwendolyn M Jang; Shoshannah L Roth; Eyal Akiva; John Marlett; Melanie Stephens; Iván D'Orso; Jason Fernandes; Marie Fahey; Cathal Mahon; Anthony J O'Donoghue; Aleksandar Todorovic; John H Morris; David A Maltby; Tom Alber; Gerard Cagney; Frederic D Bushman; John A Young; Sumit K Chanda; Wesley I Sundquist; Tanja Kortemme; Ryan D Hernandez; Charles S Craik; Alma Burlingame; Andrej Sali; Alan D Frankel; Nevan J Krogan
Journal:  Nature       Date:  2011-12-21       Impact factor: 49.962

4.  Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.

Authors:  Renate König; Yingyao Zhou; Daniel Elleder; Tracy L Diamond; Ghislain M C Bonamy; Jeffrey T Irelan; Chih-Yuan Chiang; Buu P Tu; Paul D De Jesus; Caroline E Lilley; Shannon Seidel; Amanda M Opaluch; Jeremy S Caldwell; Matthew D Weitzman; Kelli L Kuhen; Sourav Bandyopadhyay; Trey Ideker; Anthony P Orth; Loren J Miraglia; Frederic D Bushman; John A Young; Sumit K Chanda
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

5.  GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.

Authors:  Marie E Fahey; Melanie J Bennett; Cathal Mahon; Stefanie Jäger; Lars Pache; Dhiraj Kumar; Alex Shapiro; Kanury Rao; Sumit K Chanda; Charles S Craik; Alan D Frankel; Nevan J Krogan
Journal:  BMC Bioinformatics       Date:  2011-07-22       Impact factor: 3.307

6.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Tanya Barrett; Dennis A Benson; Evan Bolton; Stephen H Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M Church; Michael Dicuccio; Scott Federhen; Michael Feolo; Ian M Fingerman; Lewis Y Geer; Wolfgang Helmberg; Yuri Kapustin; Sergey Krasnov; David Landsman; David J Lipman; Zhiyong Lu; Thomas L Madden; Tom Madej; Donna R Maglott; Aron Marchler-Bauer; Vadim Miller; Ilene Karsch-Mizrachi; James Ostell; Anna Panchenko; Lon Phan; Kim D Pruitt; Gregory D Schuler; Edwin Sequeira; Stephen T Sherry; Martin Shumway; Karl Sirotkin; Douglas Slotta; Alexandre Souvorov; Grigory Starchenko; Tatiana A Tatusova; Lukas Wagner; Yanli Wang; W John Wilbur; Eugene Yaschenko; Jian Ye
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

Review 7.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

8.  Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs.

Authors:  Perry Evans; William Dampier; Lyle Ungar; Aydin Tozeren
Journal:  BMC Med Genomics       Date:  2009-05-18       Impact factor: 3.063

9.  A whole-genome association study of major determinants for host control of HIV-1.

Authors:  Jacques Fellay; Kevin V Shianna; Dongliang Ge; Sara Colombo; Bruno Ledergerber; Mike Weale; Kunlin Zhang; Curtis Gumbs; Antonella Castagna; Andrea Cossarizza; Alessandro Cozzi-Lepri; Andrea De Luca; Philippa Easterbrook; Patrick Francioli; Simon Mallal; Javier Martinez-Picado; José M Miro; Niels Obel; Jason P Smith; Josiane Wyniger; Patrick Descombes; Stylianos E Antonarakis; Norman L Letvin; Andrew J McMichael; Barton F Haynes; Amalio Telenti; David B Goldstein
Journal:  Science       Date:  2007-07-19       Impact factor: 47.728

10.  Drosophila RNAi screen identifies host genes important for influenza virus replication.

Authors:  Linhui Hao; Akira Sakurai; Tokiko Watanabe; Ericka Sorensen; Chairul A Nidom; Michael A Newton; Paul Ahlquist; Yoshihiro Kawaoka
Journal:  Nature       Date:  2008-07-09       Impact factor: 49.962
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  7 in total

1.  HIV Replication in LEGO Mosaic.

Authors:  Marshall Bushman; Laurie Zimmerman; Frederic Bushman
Journal:  AIDS Res Hum Retroviruses       Date:  2015-05-21       Impact factor: 2.205

Review 2.  Big Data Usage Patterns in the Health Care Domain: A Use Case Driven Approach Applied to the Assessment of Vaccination Benefits and Risks. Contribution of the IMIA Primary Healthcare Working Group.

Authors:  H Liyanage; S de Lusignan; S-T Liaw; C E Kuziemsky; F Mold; P Krause; D Fleming; S Jones
Journal:  Yearb Med Inform       Date:  2014-08-15

Review 3.  Host Factors in Retroviral Integration and the Selection of Integration Target Sites.

Authors:  Robert Craigie; Frederic D Bushman
Journal:  Microbiol Spectr       Date:  2014-12

Review 4.  Unraveling the web of viroinformatics: computational tools and databases in virus research.

Authors:  Deepak Sharma; Pragya Priyadarshini; Sudhanshu Vrati
Journal:  J Virol       Date:  2014-11-26       Impact factor: 5.103

Review 5.  Emergence and evolution of big data science in HIV research: Bibliometric analysis of federally sponsored studies 2000-2019.

Authors:  Chen Liang; Shan Qiao; Bankole Olatosi; Tianchu Lyu; Xiaoming Li
Journal:  Int J Med Inform       Date:  2021-08-18       Impact factor: 4.730

Review 6.  Recent strategies and progress in identifying host factors involved in virus replication.

Authors:  Renate König; Silke Stertz
Journal:  Curr Opin Microbiol       Date:  2015-06-23       Impact factor: 7.934

7.  GuavaH: a compendium of host genomic data in HIV biology and disease.

Authors:  István Bartha; Paul J McLaren; Angela Ciuffi; Jacques Fellay; Amalio Telenti
Journal:  Retrovirology       Date:  2014-01-15       Impact factor: 4.602
  7 in total

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