Literature DB >> 23711026

Modulating protein stability - directed evolution strategies for improved protein function.

Raymond D Socha1, Nobuhiko Tokuriki.   

Abstract

Protein engineering is widely used to generate proteins with novel or enhanced function. However, manipulating protein function in the laboratory can prove laborious, protracted and challenging. Recent developments in the understanding of protein evolutionary dynamics have unveiled the full extent by which the evolution of function is limited by protein stability - a revelation that may be applied to protein engineering on a whole. Thus, strategies that modulate protein stability and reduce its constraining effects may facilitate the engineering of protein function. A combinatorial approach involving the introduction of compensatory mutations and manipulation of the stability threshold by chaperone buffering during directed evolution can improve the functional adaptation of a protein, thereby fostering our ability to attain ever-more ambitious protein functions in the laboratory.
© 2013 FEBS.

Keywords:  chaperone buffering; compensatory mutations; directed evolution; kinetic stability; protein engineering; protein stability; thermodynamic stability

Mesh:

Substances:

Year:  2013        PMID: 23711026     DOI: 10.1111/febs.12354

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  29 in total

1.  Directed evolution methods for overcoming trade-offs between protein activity and stability.

Authors:  Samuel D Stimple; Matthew D Smith; Peter M Tessier
Journal:  AIChE J       Date:  2019-10-09       Impact factor: 3.993

2.  Reverse evolution leads to genotypic incompatibility despite functional and active site convergence.

Authors:  Miriam Kaltenbach; Colin J Jackson; Eleanor C Campbell; Florian Hollfelder; Nobuhiko Tokuriki
Journal:  Elife       Date:  2015-08-14       Impact factor: 8.140

3.  Decreased Protein Abundance of Lycopene β-Cyclase Contributes to Red Flesh in Domesticated Watermelon.

Authors:  Jie Zhang; Honghe Sun; Shaogui Guo; Yi Ren; Maoying Li; Jinfang Wang; Haiying Zhang; Guoyi Gong; Yong Xu
Journal:  Plant Physiol       Date:  2020-04-22       Impact factor: 8.340

4.  Ultrahigh-throughput-directed enzyme evolution by absorbance-activated droplet sorting (AADS).

Authors:  Fabrice Gielen; Raphaelle Hours; Stephane Emond; Martin Fischlechner; Ursula Schell; Florian Hollfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

Review 5.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

6.  Protein Evolution is Potentially Governed by Protein Stability: Directed Evolution of an Esterase from the Hyperthermophilic Archaeon Sulfolobus tokodaii.

Authors:  Ryo Kurahashi; Satoshi Sano; Kazufumi Takano
Journal:  J Mol Evol       Date:  2018-04-20       Impact factor: 2.395

Review 7.  A mechanistic view of enzyme evolution.

Authors:  Gloria Yang; Charlotte M Miton; Nobuhiko Tokuriki
Journal:  Protein Sci       Date:  2020-08       Impact factor: 6.725

Review 8.  Peptide aptamers: development and applications.

Authors:  Sergey Reverdatto; David S Burz; Alexander Shekhtman
Journal:  Curr Top Med Chem       Date:  2015       Impact factor: 3.295

9.  Limits to Compensatory Mutations: Insights from Temperature-Sensitive Alleles.

Authors:  Katarzyna Tomala; Piotr Zrebiec; Daniel L Hartl
Journal:  Mol Biol Evol       Date:  2019-09-01       Impact factor: 16.240

10.  Directed evolution of glycosyltransferase for enhanced efficiency of avermectin glucosylation.

Authors:  Ha-Young Choi; Hyun Seung Lim; Kwang-Hyun Park; Junheon Kim; Won-Gon Kim
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-27       Impact factor: 4.813

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