Literature DB >> 23708608

Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP.

Ruifeng Qi1, Evans Boateng Sarbeng, Qun Liu, Katherine Quynh Le, Xinping Xu, Hongya Xu, Jiao Yang, Jennifer Li Wong, Christina Vorvis, Wayne A Hendrickson, Lei Zhou, Qinglian Liu.   

Abstract

The 70-kilodalton (kDa) heat-shock proteins (Hsp70s) are ubiquitous molecular chaperones essential for cellular protein folding and proteostasis. Each Hsp70 has two functional domains: a nucleotide-binding domain (NBD), which binds and hydrolyzes ATP, and a substrate-binding domain (SBD), which binds extended polypeptides. NBD and SBD interact little when in the presence of ADP; however, ATP binding allosterically couples the polypeptide- and ATP-binding sites. ATP binding promotes polypeptide release; polypeptide rebinding stimulates ATP hydrolysis. This allosteric coupling is poorly understood. Here we present the crystal structure of an intact ATP-bound Hsp70 from Escherichia coli at 1.96-Å resolution. The ATP-bound NBD adopts a unique conformation, forming extensive interfaces with an SBD that has changed radically, having its α-helical lid displaced and the polypeptide-binding channel of its β-subdomain restructured. These conformational changes, together with our biochemical assays, provide a structural explanation for allosteric coupling in Hsp70 activity.

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Year:  2013        PMID: 23708608      PMCID: PMC3772632          DOI: 10.1038/nsmb.2583

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  58 in total

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Authors:  K D Cowtan; K Y Zhang
Journal:  Prog Biophys Mol Biol       Date:  1999       Impact factor: 3.667

2.  Intragenic suppressors of Hsp70 mutants: interplay between the ATPase- and peptide-binding domains.

Authors:  J E Davis; C Voisine; E A Craig
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

3.  Structural insights into substrate binding by the molecular chaperone DnaK.

Authors:  M Pellecchia; D L Montgomery; S Y Stevens; C W Vander Kooi; H P Feng; L M Gierasch; E R Zuiderweg
Journal:  Nat Struct Biol       Date:  2000-04

4.  Mutations in the substrate binding domain of the Escherichia coli 70 kDa molecular chaperone, DnaK, which alter substrate affinity or interdomain coupling.

Authors:  D L Montgomery; R I Morimoto; L M Gierasch
Journal:  J Mol Biol       Date:  1999-02-26       Impact factor: 5.469

5.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

6.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

7.  Coot: model-building tools for molecular graphics.

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Review 8.  The changing landscape of protein allostery.

Authors:  Joanna F Swain; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2006-01-19       Impact factor: 6.809

9.  Structural basis of interdomain communication in the Hsc70 chaperone.

Authors:  Jianwen Jiang; Kondury Prasad; Eileen M Lafer; Rui Sousa
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

10.  Direct comparison of a stable isolated Hsp70 substrate-binding domain in the empty and substrate-bound states.

Authors:  Joanna F Swain; Edda G Schulz; Lila M Gierasch
Journal:  J Biol Chem       Date:  2005-11-06       Impact factor: 5.157

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  119 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 2.  Chaperone machines for protein folding, unfolding and disaggregation.

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4.  Disrupted Hydrogen-Bond Network and Impaired ATPase Activity in an Hsc70 Cysteine Mutant.

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Journal:  Biochemistry       Date:  2018-02-01       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  2020-04-13       Impact factor: 5.157

6.  Backbone and methyl resonance assignments of the 42 kDa human Hsc70 nucleotide binding domain in the ADP state.

Authors:  Erik R P Zuiderweg; Jason E Gestwicki
Journal:  Biomol NMR Assign       Date:  2016-10-03       Impact factor: 0.746

7.  Mutations in the Yeast Hsp70, Ssa1, at P417 Alter ATP Cycling, Interdomain Coupling, and Specific Chaperone Functions.

Authors:  Patrick G Needham; Hardik J Patel; Gabriela Chiosis; Patrick H Thibodeau; Jeffrey L Brodsky
Journal:  J Mol Biol       Date:  2015-04-23       Impact factor: 5.469

8.  Human Stress-inducible Hsp70 Has a High Propensity to Form ATP-dependent Antiparallel Dimers That Are Differentially Regulated by Cochaperone Binding.

Authors:  Filip Trcka; Michal Durech; Pavla Vankova; Josef Chmelik; Veronika Martinkova; Jiri Hausner; Alan Kadek; Julien Marcoux; Tomas Klumpler; Borivoj Vojtesek; Petr Muller; Petr Man
Journal:  Mol Cell Proteomics       Date:  2018-11-20       Impact factor: 5.911

9.  Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.

Authors:  Gabrielle Stetz; Gennady M Verkhivker
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10.  Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.

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Journal:  Structure       Date:  2015-11-19       Impact factor: 5.006

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