Literature DB >> 10581970

Density modification for macromolecular phase improvement.

K D Cowtan1, K Y Zhang.   

Abstract

Density modification provides a simple and largely automatic tool for improving phase estimates for observed structure factors. The phase information arises from a combination of the known structure factor magnitudes, the current phase estimates, and stereochemical information. The magnitudes, the current phase estimates, and stereochemical information. The addition of these phase information derived from theoretical sources renders new structures amenable to solution, and reduces the effort required to solve other structures. A diverse array of techniques which have been applied to the phase improvement problem are reviewed.

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Year:  1999        PMID: 10581970     DOI: 10.1016/s0079-6107(99)00008-5

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  104 in total

1.  The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability.

Authors:  L W Hung; E L Holbrook; S R Holbrook
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.

Authors:  S Korolev; O Koroleva; K Petterson; M Gu; F Collart; I Dementieva; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

3.  Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.

Authors:  E V Filippova; J S Brunzelle; M E Cuff; H Li; A Joachimiak; W F Anderson
Journal:  Proteins       Date:  2011-06-01

4.  Crystal structure of the novel PaiA N-acetyltransferase from Thermoplasma acidophilum involved in the negative control of sporulation and degradative enzyme production.

Authors:  E V Filippova; L Shuvalova; G Minasov; O Kiryukhina; Y Zhang; S Clancy; I Radhakrishnan; A Joachimiak; W F Anderson
Journal:  Proteins       Date:  2011-06-01

5.  Crystal structure of the middle and C-terminal domains of the flagellar rotor protein FliG.

Authors:  Perry N Brown; Christopher P Hill; David F Blair
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

6.  Structure of the bacteriophage T4 DNA adenine methyltransferase.

Authors:  Zhe Yang; John R Horton; Lan Zhou; Xu Jia Zhang; Aiping Dong; Xing Zhang; Samuel L Schlagman; Valeri Kossykh; Stanley Hattman; Xiaodong Cheng
Journal:  Nat Struct Biol       Date:  2003-08-24

7.  A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Zalpha bound to DNA.

Authors:  Sung Chul Ha; Neratur K Lokanath; Dong Van Quyen; Chun Ai Wu; Ky Lowenhaupt; Alexander Rich; Yang-Gyun Kim; Kyeong Kyu Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-24       Impact factor: 11.205

8.  Structure and RNA recognition by the snRNA and snoRNA transport factor PHAX.

Authors:  André Mourão; Annabelle Varrot; Cameron D Mackereth; Stephen Cusack; Michael Sattler
Journal:  RNA       Date:  2010-04-29       Impact factor: 4.942

9.  Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance.

Authors:  John R Weir; Fabien Bonneau; Jendrik Hentschel; Elena Conti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

10.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16
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