Literature DB >> 23708360

Bending free energy from simulation: correspondence of planar and inverse hexagonal lipid phases.

Alexander J Sodt1, Richard W Pastor.   

Abstract

Simulations of two distinct systems, one a planar bilayer, the other the inverse hexagonal phase, indicate consistent mechanical properties and curvature preferences, with single DOPE leaflets having a spontaneous curvature, R0 = -26 Å (experimentally ~ -29.2 Å) and DOPC leaflets preferring to be approximately flat (R0= -65 Å, experimentally ~ -87.3 Å). Additionally, a well-defined pivotal plane, where a DOPE leaflet bends at constant area, has been determined to be near the glycerol region of the lipid, consistent with the experimentally predicted plane. By examining the curvature frustration of both high and low curvature, the transferability of experimentally determined bending constants is supported. The techniques herein can be applied to predict the effect of biologically active molecules on the mechanical properties of lipid bilayers under well-controlled conditions.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23708360      PMCID: PMC3660649          DOI: 10.1016/j.bpj.2013.03.048

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  41 in total

1.  Methodological problems in pressure profile calculations for lipid bilayers.

Authors:  Jacob Sonne; Flemming Y Hansen; Günther H Peters
Journal:  J Chem Phys       Date:  2005-03-22       Impact factor: 3.488

2.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

Review 3.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

4.  Lateral pressure profiles in lipid monolayers.

Authors:  Svetlana Baoukina; Siewert J Marrink; D Peter Tieleman
Journal:  Faraday Discuss       Date:  2010       Impact factor: 4.008

5.  Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes.

Authors:  Ana Vitória Botelho; Thomas Huber; Thomas P Sakmar; Michael F Brown
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

6.  Directly measured deformation energy of phospholipid HII hexagonal phases.

Authors:  S M Gruner; V A Parsegian; R P Rand
Journal:  Faraday Discuss Chem Soc       Date:  1986

7.  Measured effects of diacylglycerol on structural and elastic properties of phospholipid membranes.

Authors:  S Leikin; M M Kozlov; N L Fuller; R P Rand
Journal:  Biophys J       Date:  1996-11       Impact factor: 4.033

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations.

Authors:  Zun-Jing Wang; Markus Deserno
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

10.  The ELBA force field for coarse-grain modeling of lipid membranes.

Authors:  Mario Orsi; Jonathan W Essex
Journal:  PLoS One       Date:  2011-12-16       Impact factor: 3.240

View more
  26 in total

1.  The Functional Activity of the Human Serotonin 5-HT1A Receptor Is Controlled by Lipid Bilayer Composition.

Authors:  M Gertrude Gutierrez; Kylee S Mansfield; Noah Malmstadt
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

2.  A New Computational Method for Membrane Compressibility: Bilayer Mechanical Thickness Revisited.

Authors:  Milka Doktorova; Michael V LeVine; George Khelashvili; Harel Weinstein
Journal:  Biophys J       Date:  2019-01-03       Impact factor: 4.033

3.  Computer simulations of protein-membrane systems.

Authors:  Jennifer Loschwitz; Olujide O Olubiyi; Jochen S Hub; Birgit Strodel; Chetan S Poojari
Journal:  Prog Mol Biol Transl Sci       Date:  2020-02-26       Impact factor: 3.622

4.  A combined molecular/continuum-modeling approach to predict the small-angle neutron scattering of curved membranes.

Authors:  Mitchell W Dorrell; Andrew H Beaven; Alexander J Sodt
Journal:  Chem Phys Lipids       Date:  2020-10-06       Impact factor: 3.329

5.  Characterizing Residue-Bilayer Interactions Using Gramicidin A as a Scaffold and Tryptophan Substitutions as Probes.

Authors:  Andrew H Beaven; Alexander J Sodt; Richard W Pastor; Roger E Koeppe; Olaf S Andersen; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2017-09-22       Impact factor: 6.006

6.  The Curvature Induction of Surface-Bound Antimicrobial Peptides Piscidin 1 and Piscidin 3 Varies with Lipid Chain Length.

Authors:  B Scott Perrin; Alexander J Sodt; Myriam L Cotten; Richard W Pastor
Journal:  J Membr Biol       Date:  2014-10-08       Impact factor: 1.843

7.  The Surface and Hydration Properties of Lipid Droplets.

Authors:  Siyoung Kim; Jessica M J Swanson
Journal:  Biophys J       Date:  2020-10-14       Impact factor: 4.033

8.  Molecular modeling of lipid membrane curvature induction by a peptide: more than simply shape.

Authors:  Alexander J Sodt; Richard W Pastor
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

Review 9.  Membrane remodeling and mechanics: Experiments and simulations of α-Synuclein.

Authors:  Ana West; Benjamin E Brummel; Anthony R Braun; Elizabeth Rhoades; Jonathan N Sachs
Journal:  Biochim Biophys Acta       Date:  2016-03-10

10.  Physical Characterization of Triolein and Implications for Its Role in Lipid Droplet Biogenesis.

Authors:  Siyoung Kim; Gregory A Voth
Journal:  J Phys Chem B       Date:  2021-06-17       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.