Literature DB >> 33035544

A combined molecular/continuum-modeling approach to predict the small-angle neutron scattering of curved membranes.

Mitchell W Dorrell1, Andrew H Beaven2, Alexander J Sodt3.   

Abstract

This paper develops a framework to compute the small-angle neutron scattering (SANS) from highly curved, dynamically fluctuating, and potentially inhomogeneous membranes. This method is needed to compute the scattering from nanometer-scale membrane domains that couple to curvature, as predicted by molecular modeling. The detailed neutron scattering length density of a small planar bilayer patch is readily available via molecular dynamics simulation. A mathematical, mechanical transformation of the planar scattering length density is developed to predict the scattering from curved bilayers. By simulating a fluctuating, curved, surface-continuum model, long time- and length-scales can be reached while, with the aid of the planar-to-curved transformation, the molecular features of the scattering length density can be retained. A test case for the method is developed by constructing a coarse-grained lipid vesicle following a protocol designed to relieve both the osmotic stress inside the vesicle and the lipid-number stress between the leaflets. A question was whether the hybrid model would be able to replicate the scattering from the highly deformed inner and outer leaflets of the small vesicle. Matching the scattering of the full (molecular vesicle) and hybrid (continuum vesicle) models indicated that the inner and outer leaflets of the full vesicle were expanded laterally, consistent with previous simulations of the Martini forcefield that showed thinning in small vesicles. The vesicle structure is inconsistent with a zero-tension leaflet deformed by a single set of elastic parameters, and the results show that this is evident in the scattering. The method can be applied to translate observations of any molecular model's neutron scattering length densities from small patches to large length and timescales. Published by Elsevier B.V.

Entities:  

Keywords:  Curvature; Modulated phases; Neutron scattering; Vesicles

Year:  2020        PMID: 33035544      PMCID: PMC7704729          DOI: 10.1016/j.chemphyslip.2020.104983

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.329


  52 in total

1.  Application of mean field boundary potentials in simulations of lipid vesicles.

Authors:  H Jelger Risselada; Alan E Mark; Siewert J Marrink
Journal:  J Phys Chem B       Date:  2008-05-30       Impact factor: 2.991

2.  Control of a nanoscopic-to-macroscopic transition: modulated phases in four-component DSPC/DOPC/POPC/Chol giant unilamellar vesicles.

Authors:  Tatyana M Konyakhina; Shih Lin Goh; Jonathan Amazon; Frederick A Heberle; Jing Wu; Gerald W Feigenson
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

3.  Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution.

Authors:  S J Henderson
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

4.  Thermal transitions of DMPG bilayers in aqueous solution: SAXS structural studies.

Authors:  K A Riske; L Q Amaral; M T Lamy-Freund
Journal:  Biochim Biophys Acta       Date:  2001-04-02

5.  Model of a raft in both leaves of an asymmetric lipid bilayer.

Authors:  Roie Shlomovitz; M Schick
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

6.  Experimental observations of dynamic critical phenomena in a lipid membrane.

Authors:  Aurelia R Honerkamp-Smith; Benjamin B Machta; Sarah L Keller
Journal:  Phys Rev Lett       Date:  2012-06-28       Impact factor: 9.161

7.  The molecular structure of the liquid-ordered phase of lipid bilayers.

Authors:  Alexander J Sodt; Michael Logan Sandar; Klaus Gawrisch; Richard W Pastor; Edward Lyman
Journal:  J Am Chem Soc       Date:  2014-01-03       Impact factor: 15.419

8.  Monolayer spontaneous curvature of raft-forming membrane lipids.

Authors:  Benjamin Kollmitzer; Peter Heftberger; Michael Rappolt; Georg Pabst
Journal:  Soft Matter       Date:  2013-12-07       Impact factor: 3.679

9.  Intrinsic Curvature-Mediated Transbilayer Coupling in Asymmetric Lipid Vesicles.

Authors:  Barbara Eicher; Drew Marquardt; Frederick A Heberle; Ilse Letofsky-Papst; Gerald N Rechberger; Marie-Sousai Appavou; John Katsaras; Georg Pabst
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

10.  Subnanometer Structure of an Asymmetric Model Membrane: Interleaflet Coupling Influences Domain Properties.

Authors:  Frederick A Heberle; Drew Marquardt; Milka Doktorova; Barbara Geier; Robert F Standaert; Peter Heftberger; Benjamin Kollmitzer; Jonathan D Nickels; Robert A Dick; Gerald W Feigenson; John Katsaras; Erwin London; Georg Pabst
Journal:  Langmuir       Date:  2016-05-16       Impact factor: 3.882

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.